Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5389 251 9e-62 seq1508 100 4e-16 seq300154 93.3 5e-14 seq300152 93.3 5e-14 seq3661 87.8 2e-12 >seq5389 Length=131951 Score = 251 bits (278), Expect = 9e-62 Identities = 856/1326 (65%), Gaps = 6/1326 (0%) Strand=Plus/Minus Query 62932 ACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991 ||||||| | || | || ||||| || |||||||| ||||| | | | || | Sbjct 37489 ACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACT 37430 Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051 || ||||| ||||| || || || ||||||| || | || || || || |||| Sbjct 37429 CGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCT 37370 Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63111 | ||| || || ||||| || || ||| | || || || || || |||| || || | Sbjct 37369 TGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGA 37310 Query 63112 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCG 63170 | || || | ||| || | ||||| | | | || | | || | | | || Sbjct 37309 TGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCCGCCT-CG 37251 Query 63171 TATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCA 63230 || || |||| || ||||| || ||||| | ||||| | || || || Sbjct 37250 TAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCG 37191 Query 63231 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63290 | || ||||||| ||||| || || || ||| | ||||| || || || || Sbjct 37190 TTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGG 37131 Query 63291 ATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 ||||| | || || || || || | | | || ||||| || || || ||||| || Sbjct 37130 ATCCACAT-GCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCTT 37072 Query 63350 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63409 || || |||||| | | | || | ||||| || |||| ||| ||||| | | || Sbjct 37071 CAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCC 37012 Query 63410 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63469 || || ||||| || ||||| || | ||| | || ||||| || || || | || ||| Sbjct 37011 GGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCAT 36952 Query 63470 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT 63529 || | | ||||| || | || ||||| |||| ||| |||| || |||| || || Sbjct 36951 GGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGAT 36892 Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589 || | | | || || || || ||| || ||||| | ||||| | || | Sbjct 36891 GCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAG 36832 Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63649 |||||| |||||||| || ||||| || || ||||| || || || ||||| | Sbjct 36831 CGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAG 36772 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 || | || | || || || || || | || || || |||||||| ||||| || || Sbjct 36771 CTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTC 36712 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 || || || ||||||||||| | || | ||| || |||| | || || || || || Sbjct 36711 CGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGC 36652 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 || | ||| | ||||||||| || | || | | ||| ||| || |||| || ||| Sbjct 36651 CACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGCAGGTA 36592 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || |||| || || || || || ||||||| || ||||| || ||| | || || Sbjct 36591 CGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGAT 36532 Query 63890 AACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAA 63948 | || ||||| ||||| | | | || || |||| || | ||| || || | Sbjct 36531 GGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTGGAGATCA 36473 Query 63949 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 64008 | || || || || || || || || ||| || | | ||||||||||| || | Sbjct 36472 TGGGCGAGTGGCGGCCGTTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATCACGTCGC 36413 Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 | || | || || || |||||||| || || || | ||| || | |||||| || || Sbjct 36412 TGAACACCTTCTTGGTCTCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAGGCAGG 36353 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 | || || || || | || || ||||| | || ||||| ||||| ||||||| | Sbjct 36352 CGTAGTCGGGGTGCTTGGTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTGTCCAGCT 36293 Query 64129 CTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGAT 64188 | ||||| || || || | || | || || || |||||||| | || | | || | Sbjct 36292 CCACCGTGGTCACGCCGCTGTACAGCCCCTGGATCACCTTCATGGTGATCTGGGTCGGGT 36233 Query 64189 CTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAA 64248 | | |||||||| | || ||||||| || || || |||||||| || || | Sbjct 36232 CCACGAAGTCCGTGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGACGTGATCTTGTCGA 36173 Query 64249 ACATGA 64254 |||||| Sbjct 36172 ACATGA 36167 >seq1508 Length=1569309 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || || || |||||||| || || |||| ||||| |||||||| ||||| |||||| || Sbjct 105883 ACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCCTGCTTATACATCTTCCAAATGTCAGGA 105824 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||||||||||||||||| |||||||| |||| || Sbjct 105823 TATTGGATTGGGAAAATTACAAATCTTCTTGGGTT 105789 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||||||||| | || || || | || || ||||| || || | ||| | Sbjct 108330 CCTCGTCTCTACTAATCAGCTCATTGGAGTGGGCCAGGCCAGGCATCAGCCCTCTCTTCT 108271 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||||||| || || || || ||||| || ||||| ||||| ||||| | Sbjct 108270 TTAGCCAGAAGATGGAAGCAAAGGAACCCGAGAAGAAAATGCCTTCAACTGCTGCAAAAG 108211 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 108210 CGACAATTCGCTCCCC 108195 >seq300154 Length=373 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | || || || || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| ||||| || || || |||||||||||||| || ||||| || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq300152 Length=362 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | || || || || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| ||||| || || || |||||||||||||| || ||||| || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq3661 Length=2364936 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || || || | ||| || || || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| || || || || || || ||||||||||| || ||||| || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 33724 C 33724 | Sbjct 460723 C 460723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626452586908560