Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5389 260 2e-64 seq3661 105 1e-17 seq300154 102 1e-16 seq300152 102 1e-16 seq1508 102 1e-16 >seq5389 Length=131951 Score = 260 bits (288), Expect = 2e-64 Identities = 861/1331 (65%), Gaps = 16/1331 (1%) Strand=Plus/Minus Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663 ||||||| | ||||| || ||||| || || ||||| ||||| | | | || | Sbjct 37489 ACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACT 37430 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 || || || ||||| ||||| || |||| ||| || | || || || || |||| Sbjct 37429 CGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCT 37370 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 | ||| || || ||||| || || ||| | || || || || || |||| || || | Sbjct 37369 TGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGA 37310 Query 79784 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT---- 79839 | || || | ||| || | ||||| | | |||| | || | | Sbjct 37309 TGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGG----CCTTGCCCGCCGCC 37254 Query 79840 TCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 ||||| ||||| | || || ||||| || ||||| ||||| | || || | Sbjct 37253 TCGTAGCCGGTGTACAGCTTC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGC 37196 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 | |||| || ||||||| ||||| || | || || | ||||| || || | Sbjct 37195 AGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGT 37136 Query 79958 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 | || ||||| | || || || || || | || | |||||||| || || || ||| Sbjct 37135 CGGGGATCCACAT-GCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTC 37077 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 || || || || |||||| | | | || | ||||| || |||| ||| ||||| | Sbjct 37076 TTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAG 37017 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || || || ||||| || ||||| || | ||| | || ||||| || || || | | Sbjct 37016 GCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGC 36957 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| || | | || ||||| | || ||||| |||| ||| ||||| || |||| Sbjct 36956 AGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCG 36897 Query 80197 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 80256 || || || | | | || || || || ||| || ||||| | ||||| | Sbjct 36896 CGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGC 36837 Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || | ||| || ||||||||||| ||||| || || ||||| || || || ||||| Sbjct 36836 TTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTG 36777 Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 | || | || | || || || || || | || || || |||||||| ||||| Sbjct 36776 CTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCAC 36717 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCT 80436 || || ||||| || ||||||||||| | || | || || |||| | || || || Sbjct 36716 TTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCC 36657 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 ||||| || | ||| | ||||||||| || | || | | |||| || || |||| | Sbjct 36656 ACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGC 36597 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 | ||| || |||| || || || || || ||||||| || ||||| || ||| | Sbjct 36596 AGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAG 36537 Query 80557 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GA 80615 || || | |||||||| ||||| | | | || | |||| || | ||| || Sbjct 36536 ATGATGGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTGGA 36478 Query 80616 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 80675 || || || || || || || || || || ||| || | | ||||||||||| Sbjct 36477 GATCATGGGCGAGTGGCGGCCGTTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATCAC 36418 Query 80676 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAA 80735 || || || | || || || |||||||| || || || ||||| || | |||||| | Sbjct 36417 GTCGCTGAACACCTTCTTGGTCTCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAG 36358 Query 80736 AATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 80795 ||| || || || || | || || ||||| | || ||||| ||||| ||||| Sbjct 36357 GCAGGCGTAGTCGGGGTGCTTGGTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTGTC 36298 Query 80796 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAAT 80855 || || ||||| || || || | || | || ||||| |||||||| | || | | Sbjct 36297 CAGCTCCACCGTGGTCACGCCGCTGTACAGCCCCTGGATCACCTTCATGGTGATCTGGGT 36238 Query 80856 AGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTT 80915 || || | || ||||| | || || || | || || || |||||||| || Sbjct 36237 CGGGTCCACGAAGTCCGTGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGACGTGATCTT 36178 Query 80916 ATCAAACATGA 80926 || ||||||| Sbjct 36177 GTCGAACATGA 36167 >seq3661 Length=2364936 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || || || ||||| ||||| || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| ||||| || ||||| || ||||||||||| || || || || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || ||| || Sbjct 460723 CGACCACTCGCTCACC 460738 >seq300154 Length=373 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || || || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || ||||| |||||||||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq300152 Length=362 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || || || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || ||||| |||||||||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq1508 Length=1569309 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| || || |||||||| || || |||| ||||| |||||||| ||||| |||||| | Sbjct 105884 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCCTGCTTATACATCTTCCAAATGTCAGG 105825 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 |||||||||||||||||| |||||||| |||| || Sbjct 105824 ATATTGGATTGGGAAAATTACAAATCTTCTTGGGTT 105789 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||||||||| || || ||||| | || || ||||| || || | ||| | Sbjct 108330 CCTCGTCTCTACTAATCAGCTCATTGGAGTGGGCCAGGCCAGGCATCAGCCCTCTCTTCT 108271 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| ||||| || || || ||||| || ||||| ||||| ||||| | Sbjct 108270 TTAGCCAGAAGATGGAAGCAAAGGAACCCGAGAAGAAAATGCCTTCAACTGCTGCAAAAG 108211 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||| || Sbjct 108210 CGACAATTCGCTCCCC 108195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714431206520280