Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5389 242 5e-59 seq300154 93.3 6e-14 seq300152 93.3 6e-14 seq3661 87.8 2e-12 seq1508 84.2 3e-11 >seq5389 Length=131951 Score = 242 bits (268), Expect = 5e-59 Identities = 650/986 (66%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 || ||||| || ||||| ||| | ||| | || || || || || || ||||||| || Sbjct 37232 TCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGA 37174 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| || | | || | ||||| || || || || ||||| | || || | Sbjct 37173 CCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACAT-GCCGTAGA 37115 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | || || | || | |||||||| || || || ||||| || || || |||||| | | Sbjct 37114 ACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAACTCGA 37055 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | || | ||||| || |||| ||| ||||| | | || || || ||||| || | Sbjct 37054 AGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGC 36995 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||| | || ||||| || || || | || ||| || | | || |||| Sbjct 36994 CCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGG 36935 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | || ||||| |||| ||| ||||| || |||| || || ||| | | | | Sbjct 36934 AGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCGCCACGC 36875 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || ||| || ||||| | ||||| | || | ||| || |||||||||| Sbjct 36874 CGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCT 36815 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || || || ||| ||||| || || || ||||| | || | || | || | Sbjct 36814 CGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGC 36755 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | || || || | || || || |||||||| ||||| || || ||||| || ||||||| Sbjct 36754 CGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACG 36695 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 |||| | || | || || |||| | || || || ||||| || | ||| | ||| | Sbjct 36694 TCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGT 36635 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 |||| || | || | | |||| || || |||| || ||| || |||| || | Sbjct 36634 GCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGCAGGTACGAGCGCTCCAGCGTCT 36575 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661 | || || || ||||||| || ||||| || ||| | || || | || ||||| | Sbjct 36574 TGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGAGTTGAGGCGGT 36515 Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 72720 |||| | | | || || |||| || | ||| || || || || || || || Sbjct 36514 CCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGCCG 36456 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780 || || || || ||| || | | ||||||||||| || || || | || || || Sbjct 36455 TTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGTC 36396 Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840 |||||||| || || || ||||| || | |||||| || ||| || || || || | Sbjct 36395 TCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAGGCAGGCGTAGTCGGGGTGCTTG 36336 Query 72841 GTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 72900 || || ||||| | || || || ||||| ||||||| || ||||| || || || Sbjct 36335 GTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTGTCCAGCTCCACCGTGGTCACGCCG 36276 Query 72901 TTATATATTCCTTGGATAACCTTCAT 72926 | || | || ||||| |||||||| Sbjct 36275 CTGTACAGCCCCTGGATCACCTTCAT 36250 >seq300154 Length=373 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| |||||||||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq300152 Length=362 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| |||||||||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq3661 Length=2364936 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| || || || || | ||| ||||| || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || ||||| || ||||||||||| || || || || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 42207 C 42207 | Sbjct 460723 C 460723 >seq1508 Length=1569309 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| || || || ||||| || || || | ||||| |||||||| ||||| || ||| | Sbjct 105884 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCCTGCTTATACATCTTCCAAATGTCAGG 105825 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||||| ||||||||||| |||||||| |||| || Sbjct 105824 ATATTGGATTGGGAAAATTACAAATCTTCTTGGGTT 105789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667553412314520