Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5389 161 1e-34 seq3564 87.8 3e-12 seq198807 86.0 9e-12 >seq5389 Length=131951 Score = 161 bits (178), Expect = 1e-34 Identities = 351/525 (67%), Gaps = 18/525 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| ||||| ||||| ||||| | ||||||| | | | || Sbjct 36922 ACCAACGGCAACTCCAACGGCCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGC 36981 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || || || || || | ||| | ||| |||| || ||| Sbjct 36982 TACGTGGACCAGGGCGGCAACAAGCGCCCCGGGGCCTTCGCCATGTACCTGGAGCCCTGG 37041 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || | ||| || || ||| | ||| || ||| || Sbjct 37042 CACGCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCGC 37101 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||| | ||| |||| || | | ||| | || || ||||||||||| | || | Sbjct 37102 GCCCGCGACCTGTTCTACGGCATGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGTCC 37161 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | | ||| ||| ||||||||| || | ||||| ||| ||| ||| Sbjct 37162 AACCAGG------AATGGTCCCTGATGTGCCCCAACGACTGCCCCGGGCTGGACGAGTGC 37215 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| || ||||||||| |||||| | ||||||| | |||| | | | Sbjct 37216 TGGGGGGAGGAGTTTGAGAAGCTGTACACCGGCTACGAGGCGGCGGGC---AAGGCCAAG 37272 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | |||| | ||||| | |||||| | | | ||| ||||| || Sbjct 37273 CGCGTGGTGAAGGCACAGCAGGTGTGGCACGCCATCATCGAGTCGCAGACGGAGACGGGC 37332 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || || ||||| ||||||||||| || || ||||| |||||||| | || ||||| Sbjct 37333 ACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGC 37392 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||||||| | ||| ||||||||||| || | |||||| || Sbjct 37393 TGCATCAAGTCCAGCAACCTGTGCACGGAGATCATCGAGTACACC 37437 >seq3564 Length=3914096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 || ||||| | |||||| | | | ||| ||||| || || || ||||| ||||||| Sbjct 3070010 AAGTGTGGTACGCCATCATCGAGTCCCAGACGGAGACGGGCACGCCATACATCCTCTACA 3070069 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 |||| || || | || |||||||| | || |||||||||||||| || ||| | Sbjct 3070070 AGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACC 3070129 Query 97297 TGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||||| || || |||||| || Sbjct 3070130 TGTGCACGGAGATCGTGGAGTACACC 3070155 >seq198807 Length=933 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 70231 TCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTC 70290 |||| |||| |||||| | ||||| || || ||||| ||| || ||||| ||| Sbjct 862 TCCTCCAGACTTGCACAACATGGCCCTGCCTCCGTGCCACGCCCTGTGCCAGTTCTAC-- 805 Query 70291 GTA--CGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGT 70348 ||| ||| ||| | |||| ||| |||||||| | | ||||||||||| || Sbjct 804 GTAAGCGACGGCGAGCTGTCCTGCCAGCTGTATCAGCGCTCCGGGGACATGGGCCTGGGC 745 Query 70349 GTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC 70408 || ||||| ||||| || ||||| | | |||| |||||||||| ||| | |||||| Sbjct 744 GTGCCCTTCAACATCGCCAGCTACGCCCTCCTGACCTACATGATTGCCCACGTCACCGGC 685 Query 70409 CTGAA 70413 || || Sbjct 684 CTCAA 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737099841116520