Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq742 170 4e-37 seq3661 89.7 1e-12 >seq742 Length=2242023 Score = 170 bits (188), Expect = 4e-37 Identities = 174/226 (77%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || ||||||||||| || || |||||||| | Sbjct 1675282 CCCCTC--AGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACA 1675225 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 | || | || ||||| || || || || || || || |||||||| ||||| || || | Sbjct 1675224 GGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAA 1675165 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||| || ||||| ||||| ||||| |||||||||| ||| || || || || |||| Sbjct 1675164 TGCCTTCCTTGTCCTGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCT 1675105 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 1675104 CAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 1675059 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || ||||| || || || | || ||| Sbjct 1678490 AGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1678431 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || |||||||| ||||| || || || ||||| || ||| Sbjct 1678430 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 1678371 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| |||||||| || ||||| || || || ||| Sbjct 1678370 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTC 1678311 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 1678310 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1678279 Score = 109 bits (120), Expect = 1e-18 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || ||||||||||| || || |||||||| | Sbjct 1667613 CCCCTC--AGACGAAGGACAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACA 1667556 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 | || | || ||||| || || || || || || || |||||||| ||||| || || | Sbjct 1667555 GGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGA 1667496 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 | ||||| || ||||| ||||| || || || || || | ||| ||||| Sbjct 1667495 TGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCT 1667447 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 104460 CTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 |||| ||||| ||||| || ||||||||||| | |||||||| || || ||||| || | Sbjct 1665754 CTTTGTCCTGGATCTTAGCCTTTACATTTTCGATAGTATCGCTTGGCTCAACCTCAAGGG 1665695 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | || ||||| || || ||||| || || || ||||||||||| Sbjct 1665694 TGATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATTTT 1665652 >seq3661 Length=2364936 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || ||||| || ||||| ||||| || || || || || || |||||| | ||||| ||| Sbjct 460726 GTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCCTCCATCTTCTGG 460667 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || || || ||||| || | || ||||| || ||| | || ||||||||| Sbjct 460666 CTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGAACTCATCAGCAGGGAC 460607 Query 269258 GA 269259 || Sbjct 460606 GA 460605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145092872087316