Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5983 145 5e-30 seq198807 127 1e-24 >seq5983 Length=3405033 Score = 145 bits (160), Expect = 5e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||| || ||||| || | |||||||||||| |||||||| || || ||||| Sbjct 1576452 CATGTCTGTGTATTCGGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGCCCAGGTC 1576393 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || |||| | || ||||| | ||||||| || || | |||||| |||||||| Sbjct 1576392 GCCCTCCTCCCGCTCCTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGTTGGCGTC 1576333 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || |||||||| || ||||| ||||| || ||||| || Sbjct 1576332 CCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGAATTCGTGGAACC 1576285 Score = 127 bits (140), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| |||| || |||||||| || ||||| ||||||||||||||| ||||| Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| || | ||| || ||||| || || ||||| ||||||| Sbjct 1577616 ACGCCCAGGCCCATGT-CCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCT 1577558 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 ||||| ||||| |||| || || ||||||||| || || || | ||||||| Sbjct 1577557 TACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 1577503 >seq198807 Length=933 Score = 127 bits (140), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| |||| || |||||||| || ||||| ||||||||||||||| ||||| Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| || | ||| || ||||| || || ||||| ||||||| Sbjct 743 ACGCCCAGGCCCATGT-CCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCT 801 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 ||||| ||||| |||| || || ||||||||| || || || | ||||||| Sbjct 802 TACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338365732573671