Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq105711 87.8 9e-13 seq3445 87.8 9e-13 seq1279 87.8 9e-13 seq346971 84.2 1e-11 >seq105711 Length=106 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 92 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAACGGCC 33 >seq3445 Length=263299 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 129572 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 129631 >seq1279 Length=1325889 Score = 87.8 bits (96), Expect = 9e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1315151 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAACGGCC 1315092 >seq346971 Length=786 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11470 ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||| Sbjct 744 ATCGAACCCGCGACCTTCGCGTTATTAGCACGACCCTCTAACCAACTGAGCTAAACGGCC 685 Lambda K H 0.641 0.411 0.925 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260129022635452