Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq742 105 6e-18 >seq742 Length=2242023 Score = 105 bits (116), Expect = 6e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || ||| | ||||| | || ||||||||||| ||||| ||||| || Sbjct 1675214 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTT 1675155 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || || || | | |||||| | | || || |||| ||||| Sbjct 1675154 GTCCTGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGTGAT 1675095 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAAC 95016 ||| || ||||| || ||||| ||||||||||||||| || |||| Sbjct 1675094 GGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATGGTT-CAAC 1675051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| || | || | || ||||| || || | ||| || ||| | Sbjct 1678505 CCTCCCCTCAGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1678446 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || ||| | ||||| | || ||||||||||| || Sbjct 1678445 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGG 1678386 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| ||||| | || || ||||| ||| ||| ||||| || || || || Sbjct 1678385 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCAC 1678327 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAAC 95016 || | |||||||| || || || || || || || |||||||||||| || |||| Sbjct 1678326 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGTT-CAAC 1678271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445896052965720