Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_006879.1 Length=34450 Score E Sequences producing significant alignments: (Bits) Value seq213072 374 2e-99 seq256110 237 3e-58 seq272266 223 8e-54 seq295602 100 6e-17 >seq213072 Length=511 Score = 374 bits (414), Expect = 2e-99 Identities = 292/343 (85%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 5620 TTCGGCGCTCAAGTTGTCAGTTTCTACAAACGAGGTGGATTTGATATTCACGTGCCCCGC 5679 ||| ||||| | ||||||||||| | |||||||| ||||||||||||||| || ||||| Sbjct 173 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGC 232 Query 5680 GGCGATGCTTTTGATGGTGGAGGGGTCCATCTGATCAGAAAACACGATCTTTTTATTGTC 5739 || ||||| ||||| ||||| | |||||||| |||||||| | |||||||| | ||| Sbjct 233 GGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTC 290 Query 5740 AAGTTTGGTGGCGAAAGACCCGTAGAGGGCGTTGGAAAGCAACTTGGCGATGGAGCGCAG 5799 ||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 291 AAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAG 350 Query 5800 GGTCTGATTTTTCTCCCGATCGGCCCTCTCCTTGGCGGCGATGTTGAGTTGCACGTACTC 5859 ||| || ||||| | |||||||| | ||||||||| |||||||| || |||||||| || Sbjct 351 GGTTTGGTTTTT-GCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 409 Query 5860 GCGGGCCACGCACCGCCACTCGGGGAACACGGCGGTGCGCTCGTCGGGCAGGATGCGCAC 5919 ||| || ||||||||||| || ||||| |||| ||||||||||||||||| | | |||| Sbjct 410 GCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCAC 468 Query 5920 GCGCCAGCCGCGGTTGTGCAGGGTGATGAGGTCCACGCTGGTG 5962 |||||| ||||||||||||||||||| ||||| ||||||||| Sbjct 469 GCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 237 bits (262), Expect = 3e-58 Identities = 274/366 (75%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 10298 GACCTGGAAGAGGGAGAGGGGCTGGCCCGGCTGGGAGCGCCGTCCCCAGAGAGACACCCT 10357 ||| |||| ||||| ||||| ||||| ||||| |||||||| || || ||| | ||||| Sbjct 364 GACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCA 305 Query 10358 AGGGTTCAGCT----CGTGAGGGACGCCAGGCAGGCTTTTGTGCCGAAGCAGAACCTGTT 10413 ||||| ||||| ||||| |||| | |||| | |||||| |||||||||||| Sbjct 304 AGGGTGCAGCTGAAGCGTGAT--ACGCGTG--AGGCGTACGTGCCGCGGCAGAACCTGTT 249 Query 10414 TAGGGACCGCAGCGGTCAGGAGGCGGAGGAGATGCGCGATTGCAGGTTTCGGGCGGGTAG 10473 | | |||||| || ||||| | ||||||||||| ||| | | ||| | || || | Sbjct 248 TCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 10474 AGAGCTGAGGGCGGGCTTCGATCGGGAGCGGCTCCTGAGGGCGGAGGATTTCGAGCCCGA 10533 |||||| || ||| | |||| |||||| | ||| | | |||||| || |||||||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 10534 CGAGCGTTCTGGGGTGAGCCCGGCCCGCGCTCACGTCTCGGCGGCCAACCTGGTGAGCGC 10593 || ||| | ||| | || || || ||||| ||||| |||| ||| ||||||| | ||| Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGC 69 Query 10594 GTACGAGCAGACGGTGAACGAGGAGCGCAACTTCCAAAAGAGCTTTAACAATCACGTGAG 10653 |||||||||||||||||| ||||| |||||| ||| ||||||||||| |||||| | Sbjct 68 ATACGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGTGCG 11 Query 10654 GACCCT 10659 || || Sbjct 10 TACGCT 5 >seq272266 Length=497 Score = 223 bits (246), Expect = 8e-54 Identities = 351/498 (70%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 5966 ACCTCCCCGCGGAGGGGCTCGTTGGTCCAACACAATCGCCCCCCTTTTCTGGAGCAGAAC 6025 ||||| ||||| ||| ||||||||||||| || | || || || || | |||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6026 GGAGGCAGGGGATCTAGCAAGTTGGCGGGCGGGGGGTCGGCGTCGATGGTAAATATGCCG 6085 || || ||||| |||||| | || ||||||||| ||||| | |||||| | ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6086 GGTAGCAGAATTTTATTAAAATAATCGATTTCGGTGTCCGTG----TCTTGCAACGCGTC 6141 || ||||| | || || || || | | ||| || ||| || || | Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCA-TCCTTGCAAGTCTAGC---GCCTG 179 Query 6142 TTCCCACTTCTTCACCGCCAGGGCCCTTTCGTAGGGATTCAGGGGCGGTCCCCAGGGCAT 6201 | ||| | || || || | ||||| || || || || || ||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6202 GGGGTGGGTCAGGGCCGAGGCGTACATGCCGCAGATGTCGTACACGTACAGGGGCTCCCT 6261 ||||||||| || || ||||||||||||||||| |||||||| |||| |||||||| || Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6262 CAACACCCCGATGTAAGTGGGGTAACAGCGCCCCCCGCGGATGCTGGCTCGCACGTAGTC 6321 | | || | || || ||||| || | || |||||||||||||| |||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6322 GTACATCTCGTGAGAGGGAGCCATGAGCCCGTCTCCCAAGTGGGTCTTGTGGGGTTTTTC 6381 ||| | ||||| |||||||| | ||| || || | || | | | ||| | || Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6382 GGCCCGGTAGAGGATCTGCCTGAAGATGGCGTGGGAGTTGGAAGAGATAGTGGGGCGTTG 6441 || ||| || ||||||||||||||||| || |||||||| || || || || || || Sbjct 419 TGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6442 GAAGACGTTAAAGTTGGC 6459 ||||||||| ||| |||| Sbjct 478 GAAGACGTTGAAGCTGGC 495 >seq295602 Length=499 Score = 100 bits (110), Expect = 6e-17 Identities = 151/213 (71%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 14054 AACTGGTAATAAAACCTCTGGAACAAGACAGTAAAAAACGGAGTTACAACATTATATCCG 14113 ||| ||| || ||||| ||| | | ||||| || ||||| ||||||||| | ||| Sbjct 291 AACCGGTGATCAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAA--- 347 Query 14114 GCACTATGAATACCTT------GTACCGGAGCTGGTTTCTGGCTTACAACTACGGGGATC 14167 ||| | | ||||| |||||| ||||||| || || ||||||||||| || | Sbjct 348 GCAATGACAGCACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACC 407 Query 14168 CCGAAAAGGGAGTGAGATCATGGACCATACTCACCACCACGGACGTGACCTGCGGCTCGC 14227 | | | ||| | | ||||||||| | || ||| | ||||| |||||||||||| Sbjct 408 CTCAGACCGGAATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGG 467 Query 14228 AGCAAGTGTACTGGTCCCTGCCGGATATGATGC 14260 |||| || |||||||| |||| | ||||||| Sbjct 468 AGCAGGTCTACTGGTCGTTGCCAG-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109559472518888