Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5389 266 4e-66 seq300154 105 8e-18 seq300152 105 8e-18 seq3661 102 1e-16 seq1508 96.9 4e-15 >seq5389 Length=131951 Score = 266 bits (294), Expect = 4e-66 Identities = 1044/1633 (64%), Gaps = 9/1633 (1%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || || | | || | || || |||| ||| | || ||| Sbjct 37796 TACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGTGG 37737 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || ||||| |||||||| | | | || || || || ||| |||| || || || || Sbjct 37736 TAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGTAG 37677 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | || || || ||||| || | || || || || || |||||||| | || | | Sbjct 37676 CGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCCGC 37617 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 || || || | || | || || | || || | || | || || || || ||||| Sbjct 37616 TTGTTCGACCTCTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTGAGG 37557 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCT 62873 || | || || || ||| || ||| || || || || ||| | | Sbjct 37556 TTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTCGGCC 37497 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 | || ||||||| | || | || ||||| || || ||||| ||||| | | Sbjct 37496 GTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTG 37437 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | || | || ||||| ||||| || || || ||||||| || | || || || Sbjct 37436 GTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGG 37377 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||||| ||| || || ||||| || || ||| | || || || || || |||| Sbjct 37376 TTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGC 37317 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63112 || || || || || | ||| || | ||||| | | | || | | || | Sbjct 37316 GACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCC 37257 Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 | | |||| || |||| || ||||| || ||||| | ||||| || || Sbjct 37256 GCCT-CGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 37198 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 || || | || ||||||| ||||| || || || ||| | ||||| || || Sbjct 37197 GCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAG 37138 Query 63233 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 || || ||||| | || || || || || | || | || ||||| || || || | Sbjct 37137 GTCGGGGATCCACAT-GCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGT 37079 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 |||| || || || |||||| | | | || | ||||| || |||| ||| ||||| | Sbjct 37078 TCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 37019 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | || || || ||||| || ||||| || | ||| | || ||||| || || || | Sbjct 37018 AGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGC 36959 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 || ||| || | | ||||| || | || ||||| |||| ||| ||||| || ||| Sbjct 36958 GCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGG 36899 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 | || || || | | | || || || || ||| || ||||| | ||||| Sbjct 36898 CGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACT 36839 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591 | || | |||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct 36838 GCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGC 36779 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 | | || | || | || || || || || | || || || |||||||| |||| Sbjct 36778 TGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACC 36719 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63711 | || || || || || ||||||||||| | || | ||| || |||| | || || | Sbjct 36718 ACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGC 36659 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | || || || | ||| | ||||||||| || | || | | |||| ||| || |||| Sbjct 36658 CCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCA 36599 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 || ||| || |||| || || || || || ||||||| || ||||| || ||| Sbjct 36598 GCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGA 36539 Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT- 63890 | || || | |||||||| ||||| | | | || || |||| || | ||| Sbjct 36538 AGATGATGGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTG 36480 Query 63891 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 63950 || || || || || || || || || || || ||| || | | ||||||||| Sbjct 36479 GAGATCATGGGCGAGTGGCGGCCGTTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATC 36420 Query 63951 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 64010 || || || || | || || || |||||||| || || || ||||| || | |||||| Sbjct 36419 ACGTCGCTGAACACCTTCTTGGTCTCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCC 36360 Query 64011 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 64070 || ||| || || || || | || || ||||| | || ||||| ||||| ||| Sbjct 36359 AGGCAGGCGTAGTCGGGGTGCTTGGTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTG 36300 Query 64071 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTA 64130 |||| || ||||| || || || | || | || || || |||||||| | || | Sbjct 36299 TCCAGCTCCACCGTGGTCACGCCGCTGTACAGCCCCTGGATCACCTTCATGGTGATCTGG 36240 Query 64131 ATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATT 64190 | || || | |||||||| | || || || | || || || |||||||| Sbjct 36239 GTCGGGTCCACGAAGTCCGTGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGACGTGATC 36180 Query 64191 TTATCAAACATGA 64203 || || ||||||| Sbjct 36179 TTGTCGAACATGA 36167 >seq300154 Length=373 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || || || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| ||||| || ||||| |||||||||||||| || ||||| || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq300152 Length=362 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || || || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| ||||| || ||||| |||||||||||||| || ||||| || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq3661 Length=2364936 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| || || || ||||| ||||| || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| || || || ||||| || ||||||||||| || ||||| || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 33446 C 33446 | Sbjct 460723 C 460723 >seq1508 Length=1569309 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| || || |||||||| || || |||| ||||| |||||||| ||||| |||||| Sbjct 105884 TACCTCCTCAACTGTCCAGAAAGAAGCCTGTGCCTGCTTATACATCTTCCAAATGTCAGG 105825 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 |||||||||||||||||| |||||||| |||| || Sbjct 105824 ATATTGGATTGGGAAAATTACAAATCTTCTTGGGTT 105789 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||||||||| || || ||||| | || || ||||| || || | ||| | Sbjct 108330 CCTCGTCTCTACTAATCAGCTCATTGGAGTGGGCCAGGCCAGGCATCAGCCCTCTCTTCT 108271 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||||||| || || || || ||||| || ||||| ||||| ||||| | Sbjct 108270 TTAGCCAGAAGATGGAAGCAAAGGAACCCGAGAAGAAAATGCCTTCAACTGCTGCAAAAG 108211 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||| || Sbjct 108210 CGACAATTCGCTCCCC 108195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619618894339320