Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5389 215 1e-50 >seq5389 Length=131951 Score = 215 bits (238), Expect = 1e-50 Identities = 512/769 (67%), Gaps = 16/769 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATG-TCTTC 363605 |||||||||||| |||| || ||| ||| || || || || | || | | || | Sbjct 36721 TTCACGCACGCCTCGCCCACGCTGTTCAACGCCGGCACC---AACCGACCGCAGCTCAGC 36777 Query 363606 T--TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAG 363663 ||||| || || ||||||||||| ||||||||| |||| ||||| || ||| Sbjct 36778 AGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAG 36837 Query 363664 AATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT 363723 | || || || || |||||| || ||||| || || || || | | | || Sbjct 36838 CAGTGCGCGCTCATCTCCAAGTCGGCGGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGC 36897 Query 363724 GCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | || ||||| |||||| || |||| || || ||||| |||||||| Sbjct 36898 GCCACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCCATGCTG 36957 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || |||| |||| || ||| | ||||| |||||||| || |||||| ||||| Sbjct 36958 CGCGTGTACAACAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGCCCCGGGGCC 37017 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || ||||| || ||||| || ||||| | || ||||| || ||||| ||| Sbjct 37018 TTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAG 37077 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 |||||||| || ||||| ||| || || || |||||||| | | ||| | | ||| Sbjct 37078 AACACGGGCAAGGAGGAGCAGCGCGCCCGCGACCTGTTCTACGGCATGTGGATCCCCGAC 37137 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | || |||||| | |||||| | || | ||||| || | ||||| |||| || Sbjct 37138 CTGTTCATGAAGAGGGTGGAGTCCAACCAGGAATGGTCCCTGATGTGCCCCAACGACTGC 37197 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || ||| ||||| || || | || || ||| || || || Sbjct 37198 CCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTACACCGGCTACGAGGCG 37257 Query 364084 GAGGGAAAGGCT-----CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | ||| ||||| ||| | || |||||| || | ||| |||||||| | Sbjct 37258 GCGGGCAAGGCCAAGCGCGTG-GTGAAG----GCACAGCAGGTGTGGCACGCCATCATCG 37312 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | ||||||| ||||| || || ||||| ||| | ||||| || | |||||||||||| Sbjct 37313 AGTCGCAGACGGAGACGGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGA 37372 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 |||||||||| |||| || || || |||||||| || || ||||| || || | Sbjct 37373 GCAACCAGCAGAACCTGGGCTGCATCAAGTCCAGCAACCTGTGCACGGAGATCATCGAGT 37432 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||| |||||| ||||| || ||||| || || |||||||| Sbjct 37433 ACACCAGCGGGGACGAGGTCGCCGTGTGCAACCTGGCCTCCATCGCGCT 37481 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 |||||||||||||| || || || ||||||||||| || |||||||||| | |||| || Sbjct 37927 GCGCCCATGCCCACCGCCTCCACGGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCC 37986 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| || || | ||| |||| || || ||||| || | | | | || Sbjct 37987 TACACCAGCAACCTGTACACCCGCAGGGTGCTCTCGGGAGAGTTCCAGATCATCAACCCC 38046 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 || | | ||||| || | || | ||||||||| | || ||||||||| | || Sbjct 38047 CACATGCTGAAGGACCTCACGGAGAGGGGGCTGTGGAGCGAGGAGATGAAGAACCAGCTC 38106 Query 364930 ATCGC 364934 ||||| Sbjct 38107 ATCGC 38111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1296215903347914