Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5389 327 1e-84 seq742 116 3e-21 seq3564 109 5e-19 >seq5389 Length=131951 Score = 327 bits (362), Expect = 1e-84 Identities = 997/1508 (66%), Gaps = 42/1508 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||| || ||| ||||| || | | ||| | || |||| ||| ||| |||| Sbjct 38042 TTGATGATCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGC 37983 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || || || | |||||||||||| ||||| | Sbjct 37982 TCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGC 37923 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||||||||| ||| | ||||| ||| ||| ||||| Sbjct 37922 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTTCCAGTCCCAG 37863 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || || ||||| |||||||||||||||||| | |||| |||| |||||| | Sbjct 37862 AGGTCGGTGGGGGTCACGCCCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAG 37803 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | || || ||||| || | | || ||||||| |||| |||||| | Sbjct 37802 CCCGGGTACG-TCTCGTACGGCCCC-AGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCG 37745 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | || || || |||||| || ||||||||||| ||| || || ||||||| Sbjct 37744 CCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGA 37685 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || ||||| ||| | || || ||||| || ||||| | || | |||||| |||| Sbjct 37684 AGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCC 37625 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAATT 145534 | || | |||| | | |||||| | | | || || || ||||| || Sbjct 37624 GGTGCCGCTTGTTCGACCT-CTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATC 37566 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATG-TGCCGCAACTTTTCAAAGTCAAACCG 145593 || || | ||| ||| | ||||| || | | || | || ||| | ||||| || | Sbjct 37565 TTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGC-CAGCTTCTTGAAGTCGAA-GG 37508 Query 145594 AGC-CTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 || |||| | || ||| | | |||| ||||| || |||| || || || || Sbjct 37507 TGCGCTCGGC--CG-TCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGA 37451 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || || | |||| | | |||||| | ||||| ||||| | |||||| | Sbjct 37450 CCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGC 37391 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || ||||| || || || | |||||| |||||||||||||||||||| || || Sbjct 37390 CCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGC 37331 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCACCTGCT 145829 | |||||| ||||| || |||| | |||| | ||||| || |||| Sbjct 37330 CCGTCTCCGTCTGCGACT---CGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACGC 37274 Query 145830 GCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGC 145889 ||| | |||| | | ||||| |||| |||| ||||||| | || ||| Sbjct 37273 GCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGC 37214 Query 145890 AATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGA 145949 | ||| ||| ||||| || | |||||| |||||||| |||||| | ||||| | | Sbjct 37213 ACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCA 37154 Query 145950 CGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCA 146007 | | || ||| |||| || || | ||||| |||| | || ||||| |||| ||| Sbjct 37153 CCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGC- 37095 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066 ||||| ||| |||| ||||| | || | ||| ||| ||| |||||||| | Sbjct 37094 -TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGA-ACTCGAAGACGTCGGCGTGCCAGG 37037 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| ||| || || ||||| ||||||||||||| || Sbjct 37036 GCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCG 36977 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 || ||||||| | ||||||| ||||||| | | |||| ||| |||||| || | Sbjct 36976 CCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGG 36917 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCG-CCGCCGTAC 146242 || | | || || ||| | ||| || |||||||| ||| |||||| || Sbjct 36916 CGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCG-AC 36858 Query 146243 TTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTT 146299 ||||| || ||| ||||| | |||||| ||||||||||| || ||||| ||| ||| Sbjct 36857 TTGGAGATGAGC-GCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTT 36799 Query 146300 CGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAGAACA 146357 | ||| | ||||| ||||| || | ||||| |||| || || || ||||| Sbjct 36798 C--ATGGCCAGCAGGAAGCAGCTGCTGAGCTGCG--GTCGGTTGGTGCCGGCGTTGAACA 36743 Query 146358 ACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG 146416 ||| || |||||||| || || || || | || || ||||| || | ||| Sbjct 36742 GCGTGGGCGAGGCGTGCGTGAACCACTTCTCCG-ACAGCAGGTTGTACGTCTCCACGGCG 36684 Query 146417 TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476 | | ||||| || ||||||| || || | ||| |||||||| || |||||| Sbjct 36683 GCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGC 36624 Query 146477 TCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAA 146536 |||||||| | || ||||| | || || | |||||| || ||| | ||||| Sbjct 36623 TCCGCCACCTTGCCGTTGATCTTCAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAG 36564 Query 146537 AATTTGTA 146544 || ||||| Sbjct 36563 AAGTTGTA 36556 >seq742 Length=2242023 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||| || | ||| | ||| || || || || |||||||| ||| Sbjct 1678506 GCCTCCCCTCAGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 1678447 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 1678446 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGG 1678387 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 1678386 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCAC 1678327 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 1678326 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 1678278 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | ||| | ||| || || || || |||||||| || Sbjct 1675286 GCCACCCCTCAGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1675227 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 1675226 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGG 1675167 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| ||| || |||| | | | || | || || ||| ||| | Sbjct 1675166 AATGCCTTCCTTGTCCTGGATCTT-AGCTTTAACATTTTCTATGGTGTCACTGGGCTCCA 1675108 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || ||||| || || ||||||||| Sbjct 1675107 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATG 1675058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | |||||| || || || |||||||| || | Sbjct 1667616 CCTCCCCTCAGACGAAGGACAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGAC 1667557 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| ||| |||| | | |||||| || || ||| Sbjct 1667556 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGG 1667497 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 1667496 ATGCCTTCCTTGTC 1667483 >seq3564 Length=3914096 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||| | ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 3070153 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 3070094 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| |||||||||||||| ||||| || ||| |||||| ||| | Sbjct 3070093 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTCCGTCTGGG 3070034 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 3070033 ACTCGATGAT 3070024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469490912311680