Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5389 248 1e-60 seq3661 93.3 5e-14 seq1508 93.3 5e-14 seq300154 87.8 2e-12 seq300152 87.8 2e-12 >seq5389 Length=131951 Score = 248 bits (274), Expect = 1e-60 Identities = 990/1550 (64%), Gaps = 9/1550 (1%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || ||||| || || || | | || | || || |||| ||| | || ||| Sbjct 37796 TACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGTGG 37737 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || ||||| |||||||| | | | || || || || ||| |||| || || || || Sbjct 37736 TAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGTAG 37677 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | || || || ||||| || | || || || || || |||||||| | || | | Sbjct 37676 CGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCCGC 37617 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 || || || | || | || || | || || | || | || || || || ||||| Sbjct 37616 TTGTTCGACCTCTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTGAGG 37557 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCT 62728 || | || || || ||| || ||| || || || || ||| | | Sbjct 37556 TTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTCGGCC 37497 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 | || ||||||| | || | || ||||| || || ||||| ||||| | | Sbjct 37496 GTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTG 37437 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | || | || ||||| ||||| || || || |||||||| || | || || || Sbjct 37436 GTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGG 37377 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||||| ||| || || ||||| || || ||| | || || || || || |||| Sbjct 37376 TTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGC 37317 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTC 62967 || || || || || | ||| || | ||||| | | | || | | | | Sbjct 37316 GACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCC 37257 Query 62968 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGG 63027 | | |||| || |||| || ||||| || ||||| | |||||| || || Sbjct 37256 GCCT-CGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 37198 Query 63028 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63087 || || | || ||||||| ||||| || || || ||| | ||||| || || Sbjct 37197 GCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAG 37138 Query 63088 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 || || ||||| | || || || || || | || | || ||||| || || || | Sbjct 37137 GTCGGGGATCCACAT-GCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGT 37079 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 |||| || || || |||||| | | | || | ||||| || |||| ||| ||||| | Sbjct 37078 TCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 37019 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | || || || ||||| || ||||| || | ||| | || ||||| || || || | Sbjct 37018 AGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGC 36959 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 || ||| || | | || ||||| | || ||||| || | ||| ||||| || ||| Sbjct 36958 GCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGG 36899 Query 63327 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 | || || || | | | || || || || ||| || ||||| | ||||| Sbjct 36898 CGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACT 36839 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446 | || | ||| || ||||||||||| || || || ||| ||||| || || || |||| Sbjct 36838 GCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGC 36779 Query 63447 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACC 63506 | | || | || | || || || || || | || || || ||||| || |||| Sbjct 36778 TGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACC 36719 Query 63507 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63566 | || || || || || ||||||||||| | || | ||| || |||| | || || | Sbjct 36718 ACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGC 36659 Query 63567 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63626 | || || || | ||| | ||||||||| || | || | | |||| ||| || |||| Sbjct 36658 CCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCA 36599 Query 63627 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63686 || ||| || |||| || || || || || ||||||| || ||||| || ||| Sbjct 36598 GCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGA 36539 Query 63687 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT- 63745 | || || | |||||||| ||||| | | | || | |||| || | ||| Sbjct 36538 AGATGATGGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTG 36480 Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 || || || || | || || || || ||||| ||| || | | ||||||||| Sbjct 36479 GAGATCATGGGCGAGTGGCGGCCGTTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATC 36420 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | || || || || ||||| || || || ||||| || | ||||| Sbjct 36419 ACGTCGCTGAACACCTTCTTGGTCTCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCC 36360 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 || ||| || || || || | || || ||||| | || ||||| ||||| ||| Sbjct 36359 AGGCAGGCGTAGTCGGGGTGCTTGGTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTG 36300 Query 63926 TCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 |||| || ||||| || || || | || | || ||||| |||||||| Sbjct 36299 TCCAGCTCCACCGTGGTCACGCCGCTGTACAGCCCCTGGATCACCTTCAT 36250 >seq3661 Length=2364936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||| || || || | ||| ||||| || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| ||||| || ||||| || || |||||||| || || || || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 32803 C 32803 | Sbjct 460723 C 460723 >seq1508 Length=1569309 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||||||||| | || ||||| | || || ||||| || || | ||| | Sbjct 108330 CCTCGTCTCTACTAATCAGCTCATTGGAGTGGGCCAGGCCAGGCATCAGCCCTCTCTTCT 108271 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| ||||| || || || |||||||| ||||| ||||| ||||| | Sbjct 108270 TTAGCCAGAAGATGGAAGCAAAGGAACCCGAGAAGAAAATGCCTTCAACTGCTGCAAAAG 108211 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||| || Sbjct 108210 CGACAATTCGCTCCCC 108195 >seq300154 Length=373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| || || || ||||| ||||| |||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 >seq300152 Length=362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| || || || ||||| ||||| |||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | || ||| || Sbjct 95 CAACCACTCGCTCACC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630246607189200