Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq742 120 3e-22 seq5389 91.5 1e-13 >seq742 Length=2242023 Score = 120 bits (132), Expect = 3e-22 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 22202 TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTC 22261 ||| |||| ||| || ||||| || ||||| ||||| | || || || || |||| | Sbjct 1675043 TTTTTACAGTTG-AACCATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCC 1675101 Query 22262 TTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGG 22321 |||| ||||| ||| || ||| | || || | ||| || || || |||||||| | Sbjct 1675102 TTGAGGTGGAGCCCAGTGACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAG 1675161 Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 | ||||| || ||||| || | || || || |||||||| ||| | || ||| |||| Sbjct 1675162 GCATTCCCCCAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCA 1675221 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || |||||||| || |||||||||||| | ||| Sbjct 1675222 CCCTGTCTGACTACAACATCCAGAAAGAATCCACCCTCCAT 1675262 Score = 105 bits (116), Expect = 6e-18 Identities = 171/245 (70%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||| || | ||| || ||||| || || || || || | ||||| || || |||| Sbjct 1678262 TTTTTTAAAGTTG-AACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACC 1678320 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || || ||||| | | ||| ||| | || | | || || || || |||||||| Sbjct 1678321 CTGGAGGTGGAGCCTAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAA 1678380 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || || || ||||| || | || || || |||||||| ||| | || ||| ||| Sbjct 1678381 GGCATCCCCCCAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGC 1678440 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | ||||| |||||||| || |||||||||||| | ||| | || |||| || | Sbjct 1678441 ACCCTGTCCGACTACAACATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCTGAGG 1678500 Query 22441 GGAGG 22445 ||||| Sbjct 1678501 GGAGG 1678505 >seq5389 Length=131951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 248/372 (67%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 130024 TTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG--CGCTTTTCTATCCT 130081 ||||| |||| ||||| | ||||| | |||| |||| || || ||| | || ||| Sbjct 37148 TTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCT--CCT 37091 Query 130082 CGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAA 130141 | ||| |||| ||||| || ||||| ||| | | |||||||||||| || || | Sbjct 37090 CCTTGCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCA 37031 Query 130142 CATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCAT 130198 || || || | || || || ||||| || ||||| |||| |||| | | | Sbjct 37030 GGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGT 36971 Query 130199 TGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGA 130258 ||||||| || |||| ||| | | ||| ||||||| ||||||| |||| | ||| Sbjct 36970 TGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGT 36911 Query 130259 AACTGCCACGAGCCCGAACG-TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 | || || || || | | | | ||| | || |||||||| | | || || Sbjct 36910 AGCTCCCCGTGGCGCGGATGCAGCTCACCGC-CACGCCGATGCCGCCCGCCGACTTGGAG 36852 Query 130318 ATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTT 130376 || | |||||| | || | ||||| || || ||||| |||| ||||| || || ||| Sbjct 36851 ATGAGCGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGC 36793 Query 130377 TAGGAGGAAACA 130388 || ||||| || Sbjct 36792 CAGCAGGAAGCA 36781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417541524964255