Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq742 188 1e-42 seq5389 140 6e-28 seq420729 87.8 3e-12 seq4042 87.8 3e-12 seq196 87.8 3e-12 seq3661 84.2 4e-11 >seq742 Length=2242023 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| ||||| |||||||| || ||||| Sbjct 1678505 CCTCCCCTCAGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1678446 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| |||||||| || || || || || || || || Sbjct 1678445 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGG 1678386 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 1678385 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCAC 1678327 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||||||||||||||| |||||||| Sbjct 1678326 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1678279 Score = 147 bits (162), Expect = 4e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || || || || || | ||||||||| | Sbjct 1675266 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 1675207 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| |||||||| || || || || || || || ||||||||||||||||| || | Sbjct 1675206 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 1675147 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| || || || || |||||||| | || || || | ||||||||| || | Sbjct 1675146 TCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGC 1675087 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| ||||| || |||||||| Sbjct 1675086 CAGTCAGGGTTTTGACAAAGATCTGCAT 1675059 Score = 123 bits (136), Expect = 5e-23 Identities = 117/148 (79%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||| |||||||| || || || || || | ||||||||| | Sbjct 1667597 CAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 1667538 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| |||||||| || || || || || || || || |||||||||||||| || | Sbjct 1667537 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGA 1667478 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTC 68401 |||| ||||| ||| |||||||||||| Sbjct 1667477 TCTTGGCCTTCACGTTCTCGATGGTGTC 1667450 >seq5389 Length=131951 Score = 140 bits (154), Expect = 6e-28 Identities = 581/906 (64%), Gaps = 18/906 (2%) Strand=Plus/Minus Query 31412 CTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTC 31471 ||||| ||| || ||| || |||| ||||| | || ||||||| || |||| || Sbjct 37752 CTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCC---TC 37696 Query 31472 AGAG---TCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCAC 31528 | | || || || ||||| | || ||| |||| || ||||| || || | Sbjct 37695 CGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGAT 37636 Query 31529 TCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGAC 31588 || || || || | ||| |||| ||| |||| || | | |||| | |||| Sbjct 37635 GCCGATAGGCCGGTGCCGCTTGTTCGACCTCTCGCCCTCCGGCACCGGGTAGAAGTTGAC 37576 Query 31589 GTCAATGCTCTTGTCGAGGTTCTTGGCCAGAATCTTCACGT-GCTTGCGAAGGTCCTCAA 31647 || ||| |||||| ||||||||| | | | ||| | ||| || | | | || | Sbjct 37575 CTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCA-GCTTCTTGA 37517 Query 31648 AGTCGTAGGCAC---CGTTCTTGACGTAGTTCTGGAGGACGATGCTTCCAATGACACACA 31704 ||||| ||| | || | | ||||| | | ||| ||||| | | | |||| Sbjct 37516 AGTCGAAGGTGCGCTCGGCCGTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACA 37457 Query 31705 CCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGA 31764 | || |||||| ||||| |||| ||||| | || || |||||| | ||| Sbjct 37456 CGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGA 37397 Query 31765 TGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAA 31823 || ||| || ||| || |||| ||| || || |||||||| ||||| ||| Sbjct 37396 TGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGC-GTCCTTGTAGAGCATGTAG 37338 Query 31824 GGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACG 31883 ||| |||||||||| |||||| ||| || || | ||| || | | || || || Sbjct 37337 GGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACC 37278 Query 31884 ACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCA 31943 || ||| || ||| | | |||||||| ||||| | ||| |||||| || Sbjct 37277 ACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCC 37218 Query 31944 AAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCC 32003 || ||| || ||||| || || |||||| | || |||||| | | || | Sbjct 37217 CAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGAC 37158 Query 32004 TCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGT 32063 || || | |||||||||||||||| | |||||| |||| ||||| | | |||||| Sbjct 37157 TCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGC 37098 Query 32064 TGGGTCTCCTCACCCTGGTTACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTG 32122 || ||||| ||| ||| | || ||| |||||| || | || ||||| ||| Sbjct 37097 TGCTCCTCCTTGCCCGTGTT-CTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCA 37039 Query 32123 GGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCGTATGC 32179 |||||| ||||||| |||||| | || ||| | || ||||||| |||| Sbjct 37038 GGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCG 36979 Query 32180 AGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCC 32239 | || ||| |||||| ||||||||| || | ||| | || | ||| ||||| || Sbjct 36978 CGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCC 36919 Query 32240 CTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCGCCACCAAA 32299 ||| | | || | |||| ||| ||||| || |||||||||||| | | Sbjct 36918 GGCGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGA 36859 Query 32300 CTTGGA 32305 |||||| Sbjct 36858 CTTGGA 36853 >seq420729 Length=607 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| || ||||||| || ||||||||||||||| Sbjct 277 CGCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTGAGGGTCGTGGGTTCGAG 218 Query 84515 CCCCACATCGGGC 84527 |||||||| |||| Sbjct 217 CCCCACATTGGGC 205 >seq4042 Length=873743 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 268500 CGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGC 268559 |||| || |||||||| | ||||||||| || ||| || ||||| || | ||||||| Sbjct 264895 CGTAAGGCGAACGTGGGTAGAAGGGCGTGGTCTCCTTCTGGGGGATCTCCTGCACTTTGC 264954 Query 268560 CAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTT--GTTGTTTTTTCGAGACCGCAGAT 268617 || | ||||| ||| || || |||||||| | | |||| | || ||||| | Sbjct 264955 CATACAGCTCACTGGTGGAGGCCTGGTAGAAGCGTACGCTGTTGGTC--AGGCCGCACGT 265012 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||| || || |||| || || || |||| ||||||||||| || || ||||| | Sbjct 265013 CTTGATGGCGTCCAGCAGCCGCAGCGTGCCCACGCCATCCACGTTGGCCGTGTACTCGGC 265072 Query 268678 CATCTCGAATGACACCTGG 268696 || ||||| || | |||| Sbjct 265073 CAGGTCGAAAGAGATCTGG 265091 >seq196 Length=13486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| || ||||||| || |||||||||||||||| Sbjct 4090 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4149 Query 84516 CCCACATCGGGCA 84528 ||||||| ||||| Sbjct 4150 CCCACATTGGGCA 4162 >seq3661 Length=2364936 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 9894 TAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTC---ATGACGCCCGCCTTC 9950 |||||||| ||||| | | || |||||| |||| | ||||| ||| | | Sbjct 459186 TAGAAGTCAGCGTCTAGTCTGAAAGTGTTGTCCGTGGCACCCGACATGACCCCCATCCTT 459245 Query 9951 TGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCC 10010 |||||||| || || |||||||||||||| ||| ||||| ||||| ||| |||| Sbjct 459246 TGGTACTCTCCCACACGCTTCTCGAAGAAGTTGGTCTTCCCCTCCAGGGAGATGTTCTCC 459305 Query 10011 ATGAAGTCAAAGGGGTTCTC 10030 |||||||| ||||||||||| Sbjct 459306 ATGAAGTCGAAGGGGTTCTC 459325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916698321280440