Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5389 704 0.0 seq3564 134 3e-26 seq3661 114 2e-20 seq300154 111 3e-19 seq300152 111 3e-19 seq2030 93.3 8e-14 >seq5389 Length=131951 Score = 704 bits (780), Expect = 0.0 Identities = 1132/1617 (70%), Gaps = 40/1617 (2%) Strand=Plus/Minus Query 244003 CTGCANNGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA 244062 ||| | || || || || ||||||||||| | ||| | ||| ||||||| ||| Sbjct 38130 CTGAATGGATCCGTTCTGCGCGATGAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCC-- 38073 Query 244063 GCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCAC 244119 | |||| || ||| | || ||| ||| | | ||| ||||||||||| ||||| Sbjct 38072 -CTCTCCGTGAGGTCCTTCAGCATGTGGGGGTTGATGATCTGGAACTCTCCCGAGAGCAC 38014 Query 244120 GCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTG 244179 | ||| ||| ||||||||| || ||||||||| ||| |||||||||| ||||| Sbjct 38013 CCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTG 37954 Query 244180 CGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTG 244239 |||||| || || |||||||||| || |||||| |||||||||||||||||| | Sbjct 37953 TGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGC 37894 Query 244240 GATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCC 244299 ||| ||||| ||||||||||| |||||| | | | | ||| Sbjct 37893 GATCTTCTCCTTGAGCAGCTTCCAGTCCCA---------GAGGTCGGTGGGGGTCACGCC 37843 Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 ||||||||| ||||||||| ||||||||||||||||| |||| ||| ||| ||| || Sbjct 37842 CCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAGCCCGGGTACGTCTCGTACGG 37783 Query 244360 ACCGTCGCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418 || || | | ||| ||| |||||| || || || |||| |||||||||||||| Sbjct 37782 CCCCA-GCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGA 37724 Query 244419 AGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGA 244478 |||| | |||| | | |||||| || ||||||| || ||||| |||| Sbjct 37723 AGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGA 37664 Query 244479 AGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCA 244538 || |||||||||| |||||||||||||||||||| || | ||| |||||||| || | | Sbjct 37663 AGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCCGCTTGTTCGACCTCT 37604 Query 244539 TGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA 244598 | | || ||||| ||||| |||||| | ||||| | |||||||||||| ||||| Sbjct 37603 CGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCA 37544 Query 244599 TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGA 244658 | |||| ||||||| || |||||| | || | |||||| Sbjct 37543 CCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAG--GTGCG----CTCGGC-------- 37498 Query 244659 TCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGT 244718 | |||| || |||||| |||| | |||||||||||| ||||| ||||| ||| | Sbjct 37497 -CGTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGC 37439 Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| || ||||| ||||| ||||| ||| |||||||| |||||||| ||| | Sbjct 37438 TGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCT 37379 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | ||| |||| ||||||||||||||||||||||||| ||||| || ||||| || Sbjct 37378 GGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCT 37319 Query 244839 GGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT 244898 | | ||| || | || ||| | | | ||||| ||| | ||||||||| Sbjct 37318 GCGACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCG 37259 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG 244958 | |||||||||| ||||||||| ||| ||||| |||||| |||||| || |||| Sbjct 37258 CCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 37199 Query 244959 GGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 |||| | || ||| ||||| || ||| || | | || ||||||| |||||| Sbjct 37198 GGCA-GTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAAC 37140 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 |||||||||||||| | | | | ||| ||||| | || | |||||| ||| ||| ||| Sbjct 37139 AGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTG 37080 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 |||||| ||||||||| || || ||||||||| ||||||||||||||| ||| | ||| Sbjct 37079 TTCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCG 37020 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATG 245197 | ||| ||||| ||||||||||| ||||||||||| | | | |||| | | | Sbjct 37019 AAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACG 36960 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 ||||| | ||||| | |||||| |||| |||||||||||| ||||||| ||| || Sbjct 36959 CGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTG 36900 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 | | || | ||| | | || ||| | ||||| || |||||||||||| ||||| Sbjct 36899 GCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCAC 36840 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||||| ||||| |||||||| |||||||| ||||||| ||||| |||||| Sbjct 36839 TGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAG 36780 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | ||||| || | | ||| | ||||||||| ||||| |||||| || || Sbjct 36779 CTGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAAC 36720 Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | || ||| || | |||||||| | |||||||||| |||||| Sbjct 36719 CA-CTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGAT 36661 Query 245497 CTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT--CGGGTCCC 245554 || || |||||| || ||||||| ||| ||| | || | || | Sbjct 36660 GCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTC--CGCCACCTTGCCGTTGATC 36603 Query 245555 TTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 || |||| ||| |||||||| ||||||||||| || ||| | |||| |||||| Sbjct 36602 TTCAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCG 36546 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || |||||| |||||||||||||||| | ||| | | || || |||||||| | | || Sbjct 38502 GATGTTGAGCGACTGGCTCTGGTCGATGTAGGCCCCGCGGTCCGCGGCCATCTTCAGGAT 38443 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| ||| |||| | | |||| ||| Sbjct 38442 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTCCTTCAGGTCCGCCGGGATCCC 38383 Query 243994 TTCGATGTTCTGCA 244007 |||| ||||| Sbjct 38382 AGAGATGGCCTGCA 38369 >seq3564 Length=3914096 Score = 134 bits (148), Expect = 3e-26 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 |||||||||||||| || ||||||| ||||| |||| || | | ||||||| Sbjct 3071084 CCCTTGCTGACGGGTGATCCAGGGTAGGTCTGGTAGCTGCCGT-GCACAGCAGCCAGCTC 3071026 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 |||||| || ||||| || |||||||||||||| |||||| |||| | | || Sbjct 3071025 ACAGCTGGACTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATGTTGA-GCAGCT 3070967 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| | || |||||||| | ||| | |||||| |||||||||| ||||| | Sbjct 3070966 GGGCCTCGGGGCTTTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGGA 3070907 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||||||||||||| || ||||| |||||||||||| Sbjct 3070906 CGCCGATGCCGATAGGCCTGTGGCGCTTGTTGGAG 3070872 Score = 123 bits (136), Expect = 5e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 3070171 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 3070112 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| ||||||||||||||||||||| ||| | ||| Sbjct 3070111 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCG 3070052 Query 244824 CCCCGGTCTCGAGCTGGG 244841 || ||||| ||||| Sbjct 3070051 TGCCCGTCTCCGTCTGGG 3070034 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| || ||||| || | ||| ||||| ||||||| || ||||| ||| Sbjct 3071845 ACCTGGAACTCCCCAGACAGAACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATG 3071786 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || |||||||| | || ||||||| Sbjct 3071785 GACTCGTTGTTACCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGAGCCAGCAGCAGA 3071726 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| ||||| |||||||| Sbjct 3071725 CTGTTTCTCACCCCGTGCCT 3071706 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| | | | | ||| ||||| |||| || |||||| || Sbjct 3069622 CTCCATGAAGAGATCTGGTATCCACATGCCGTAGAACAGGTCTCTGGCCCGCTGCTCCTC 3069563 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| ||||||||| || ||||| || || | ||||||||||| | Sbjct 3069562 CTTACCGGTGTTCTTCTTCAGCTCCAGGAACTCAAACACATCTGCATGCCAGGGCTCTAG 3069503 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 || | || | ||| || |||| || Sbjct 3069502 ATACATGGCAAAGGCTCCAGGCCTCT 3069477 >seq3661 Length=2364936 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || | || || || || ||||| ||||| ||| | || ||||||||||||| Sbjct 460728 TGGTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCCTCCATCTTCT 460669 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || | |||||||| || |||||||| || |||||||||||||||| Sbjct 460668 GGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGAACTCATCAGCAGGG 460609 Query 42826 ACGAGG 42831 |||||| Sbjct 460608 ACGAGG 460603 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 459320 CCCCTTCGACTTCATGGAGAACATCTCCCTGGAGGGGAAGACCAACTTCTTCGAGAAGCG 459261 Query 43130 CGTCGCCGACTACCA 43144 || | || ||||| Sbjct 459260 TGTGGGAGAGTACCA 459246 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 467890 CCCCTTCGACTTCATGGAGAACATCTC--TGGAGGGGAAGACCAACTTCTTCGAGAAGCG 467833 Query 43130 CGTCGCCGACTACCA 43144 || | || ||||| Sbjct 467832 TGTGGGAGAGTACCA 467818 >seq300154 Length=373 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || | || || || || ||||||||||| ||| | |||||||||||||||| Sbjct 90 TGGTTGCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCT 149 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || | |||||||| || || ||||| || || ||||||||||||| Sbjct 150 GGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACTTTCTCCAATGAGCTCATCAGCAGGG 209 Query 42826 ACGAGG 42831 | |||| Sbjct 210 ATGAGG 215 >seq300152 Length=362 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || | || || || || ||||||||||| ||| | |||||||||||||||| Sbjct 90 TGGTTGCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCT 149 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || | |||||||| || || ||||| || || ||||||||||||| Sbjct 150 GGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACTTTCTCCAATGAGCTCATCAGCAGGG 209 Query 42826 ACGAGG 42831 | |||| Sbjct 210 ATGAGG 215 >seq2030 Length=313715 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||||||| | ||||| || |||||| ||| |||||| || ||||| || ||| Sbjct 168073 GACAGGACCACGACCATCGGGAAGCTGATCAGCTCCTACCTGGAGAATAAGAGTGACCTG 168014 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 || || ||| ||| ||||| ||||||||||||||||| ||||| Sbjct 168013 GAGGACCACACCGTGCACCTGCTGTTCTCGGCCAACCGCTGGGA 167970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939293749109520