Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq198807 96.9 3e-15 seq5983 93.3 4e-14 >seq198807 Length=933 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || |||| ||| || || | ||||| |||||||| ||||| || || Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||||| || || | |||||||||||| ||||| ||||| ||||| | Sbjct 743 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 802 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || || || || | ||| || || || || ||||| Sbjct 803 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCAT 843 >seq5983 Length=3405033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || || | ||| || || | ||||| |||||||| ||||| || || Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||||| || || | |||||||||||| ||||| ||||| ||||| | Sbjct 1577616 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 1577557 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || || || || | ||| || || || || ||||| Sbjct 1577556 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCAT 1577516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439014616852680