Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq742 150 4e-31 >seq742 Length=2242023 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| |||||| ||||| || ||||||| || ||||| || ||| Sbjct 1678490 AGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1678431 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || ||||||||||| | ||| ||| |||||| || ||||| || Sbjct 1678430 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGA---TCTGGGGGGATGCCTTCCTTG 1678374 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || || | ||||| | || || || || ||||| Sbjct 1678373 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATG 1678314 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||||||||| |||||||| Sbjct 1678313 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1678279 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | ||| |||||| ||||| || ||||| | Sbjct 1675285 CCACCCCTCAGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1675226 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || ||||||||||| | ||| || ||||||| Sbjct 1675225 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTG---ATCTGGG 1675169 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || ||||| || |||||||| | || || | || Sbjct 1675168 GGAATGCCTTCCTTGTCCTGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCC 1675109 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 1675108 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 1675059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||| | || |||||| ||||| || ||||| | || ||||| || || Sbjct 1667602 AAGGACAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1667543 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| | || || || ||||||||||| | ||| || |||| ||||| ||||| || Sbjct 1667542 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTG---ATCTGGGGGGATGCCTTCCTT 1667486 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 |||||||| || || |||||||| || || | ||||| Sbjct 1667485 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCT 1667447 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 288374 CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCG 288433 |||| |||||||| || || || || ||||| |||| |||||| | || || || || | Sbjct 1665754 CTTTGTCCTGGATCTTAGCCTTTACATTTTCGATAGTATCGCTTGGCTCAACCTCAAGGG 1665695 Query 288434 TGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||| ||||| || || || ||||||||||| ||||||||| Sbjct 1665694 TGATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATT 1665654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173194130690506