Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5389 131 2e-25 seq3564 98.7 1e-15 seq3661 93.3 5e-14 seq300154 84.2 3e-11 seq300152 84.2 3e-11 >seq5389 Length=131951 Score = 131 bits (144), Expect = 2e-25 Identities = 877/1389 (63%), Gaps = 52/1389 (4%) Strand=Plus/Minus Query 113948 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTG 114007 ||| | ||||| ||||| | | |||| ||||| |||| ||| || || |||||||| ||| Sbjct 37997 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTG 37938 Query 114008 GGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGG 114067 |||||||| |||| || |||||||| | | || | | || |||||||| Sbjct 37937 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGC 37878 Query 114068 -GC-----GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || ||||||| || | || | ||| | ||| ||||| || |||| || Sbjct 37877 AGCTTCCAGTCCCAGAGGTCGGTGGGG---GTCACGCCC---CACATGTCGTACTGCAGC 37824 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 | || | | | | || | ||| | |||||||| || ||| || ||||| Sbjct 37823 ACCCCCTTGCTGACGGGGCAGCCCGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGC 37764 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||||| ||| || || ||||| || || ||||| || ||| | || | | Sbjct 37763 TCGCAGCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGC 37704 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 | |||||| | || || | | || || || || | || || || || || Sbjct 37703 TGGGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGC 37644 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATA 114360 || |||| ||| || || || || | | | || ||| | | || || ||| || || Sbjct 37643 ACGCCGATGCCGATAGGCCGGTGCCGCTTGTTCGACCT-CTCGCCCTCCGGCACCGGGTA 37585 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 || || ||||| | | | || || || || || ||||| |||| || Sbjct 37584 GAAGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAG 37525 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 ||| | | | || || |||| ||| | | || ||| | || ||||| || || Sbjct 37524 CTTCTTGAAGTCGAAGGTGCG---CTCGGCCGTCACGTACATGTTGAGCGCGATGGAGGC 37468 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 ||| || ||||| | | ||| ||| |||||||| || || ||||| |||| || Sbjct 37467 CAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTT 37408 Query 114541 --TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 || ||| | ||| ||||| ||||| || || ||| ||| || || |||||| Sbjct 37407 GCTGGACT--TGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTG 37350 Query 114599 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT-C 114657 || |||||||| ||||| ||||||||||| || |||| || || || | ||| || | | Sbjct 37349 TAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACCTGC 37290 Query 114658 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 | | || ||| | ||||| ||| || ||||||| ||||| || || Sbjct 37289 TGTGCCT-TCACCACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTC 37231 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 |||||| || ||| | ||| ||||| || | | ||||| | || ||||| Sbjct 37230 AAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCA 37171 Query 114778 TTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 || || | ||| || | ||||||||| ||||| |||||||| | | |||| Sbjct 37170 TT--CCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAAC 37113 Query 114836 AGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 114894 || || || ||| ||| || | | ||| || || || ||||| || || | Sbjct 37112 AGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAGGAACTCGAA 37054 Query 114895 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACC 114948 || || |||||||| || |||||||||| |||| | ||| ||| | | || Sbjct 37053 GACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTT--GTTG-CC 36997 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 |||||| || || | ||| ||| || | ||||| ||||| || | | || | Sbjct 36996 GCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTT 36937 Query 115009 AGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CA--TCATGGATGT 115064 || | ||| || || || || | |||| | || || ||| | Sbjct 36936 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCG---- 36881 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || || || || || ||| |||| ||||| ||||||||| | |||| || |||||| Sbjct 36880 CCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGA 36821 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC--T 115182 | || ||||| ||| |||| | || | ||||||||||| | || || | | Sbjct 36820 TGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGT 36761 Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 115241 ||||| || |||||||| || || || | ||||| ||||| || | | |||| | Sbjct 36760 TGGTG--CCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCA 36704 Query 115242 TATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | ||| ||||||| | ||||| ||||| | ||| || || | || |||| || Sbjct 36703 GGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCA 36644 Query 115302 TAAACATGT 115310 | | ||||| Sbjct 36643 TCAGCATGT 36635 >seq3564 Length=3914096 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||||| | |||| |||||||||| ||| |||||||||||| Sbjct 3071812 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAG 3071753 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 || ||||||||||| |||| || || ||||| Sbjct 3071752 GCGGTGGGCATGGGAGCCAGCAGCAGACTGTT 3071721 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 ||| ||||| |||||||| | || ||||| |||| || | ||| |||||||| Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 || ||||| || || ||| |||| || || |||||||| || ||||||||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCC 3070048 Query 114619 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 ||||||||| ||||||| || || || | ||| || Sbjct 3070047 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACAC 3070012 >seq3661 Length=2364936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||||||||| |||||| ||| || ||||| || |||| ||||| Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | ||| || || ||||| |||||||| |||||| ||||| | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 126186 CAAAGAGACGCTCA 126199 | | | |||||| Sbjct 460723 CGACCACTCGCTCA 460736 >seq300154 Length=373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||| ||||| ||||| ||| || ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | || || || |||||||||||||| |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 126186 CAAAGAGACGCTCA 126199 ||| | |||||| Sbjct 95 CAACCACTCGCTCA 82 >seq300152 Length=362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||| ||||| ||||| ||| || ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | || || || |||||||||||||| |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 126186 CAAAGAGACGCTCA 126199 ||| | |||||| Sbjct 95 CAACCACTCGCTCA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594162036785160