Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4563 86.0 7e-12 seq5457 84.2 2e-11 seq406260 82.4 8e-11 seq396948 82.4 8e-11 seq292949 82.4 8e-11 seq150899 82.4 8e-11 seq2003 82.4 8e-11 >seq4563 Length=585268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 583051 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 583110 Query 57063 ACTATACTACCGAGGATTGA 57082 ||||||||| |||||| ||| Sbjct 583111 ACTATACTAACGAGGAGTGA 583130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 56999 AAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | |||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 582876 AAAATTGTAACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 582935 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || |||||||||||| |||||| || Sbjct 582936 CTGACCACTATACTAACGAGGAGTG 582960 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 581800 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 581859 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 581860 TACTAACGAGGAGTG 581874 >seq5457 Length=527991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 296378 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 296437 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 296438 TATACTAACGAGGA 296451 >seq406260 Length=118 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 76 TTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 17 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 16 CTATACTAACGAGGA 2 >seq396948 Length=300 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 117 TTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 176 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 177 CTATACTAACGAGGA 191 >seq292949 Length=304 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| |||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 290 AAAAATTTGAACCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 231 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 230 TACTGACCACTATACTAACGAGGA 207 >seq150899 Length=141 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 64 TTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 123 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 124 CTATACTAACGAGGA 138 >seq2003 Length=750281 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 716408 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 716349 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 716348 TACTAACGAGGAGTG 716334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540310502281680