Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5389 336 2e-87 seq3564 100 3e-16 >seq5389 Length=131951 Score = 336 bits (372), Expect = 2e-87 Identities = 1049/1602 (65%), Gaps = 39/1602 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| || |||||| |||||||| || ||||| | |||| | Sbjct 36556 TACAACTTCTTCGGCTTCAAGACGCTGGAGCGCTCGTACCTGCTGAAGATCAACGGCAAG 36615 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || |||||||| | || || | || || ||| ||| Sbjct 36616 GTGGCGGAGCGGCCGCAGCACATGCTGATGAGGGTGGCGGTGGGCATCCACAAGAGGGAC 36675 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | || | | | || || ||| | || ||| ||| || || Sbjct 36676 ATCGACGCC-GCCGTGGAGACGTACA---ACCTGCTGTCGGAGAAGTGGTTCACGCACGC 36731 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 | | || || ||||||||||| || ||| ||| || ||| | || |||||| Sbjct 36732 CTCGCCCACGCTGTTCAACGCCGGCACCAACCGA--CCGCAGCTCAGCAGCTGCTTCCTG 36789 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | |||| |||| |||| || || | ||||| |||||| | || ||| | Sbjct 36790 CTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGCTC 36849 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||||| || ||||| | || | | | || |||| ||| | Sbjct 36850 ATCTCCAAGTCGGCGGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCGCCACGGGGAGC 36909 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| ||||| |||| |||||||||||| || || ||||| || || | |||| Sbjct 36910 TACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCCATGCTGCGCGTGTACAAC 36969 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||||||||||||||||||||| || | | | || | ||||| | || Sbjct 36970 AACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGCCCCGGGGCCTTCGCCATGTAC 37029 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || |||||||||||||| ||||| | ||| | || ||| |||||| ||||| Sbjct 37030 CTGGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAGAACACGGGCAAG 37089 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | || | ||| | ||||| ||||||| | ||| | || ||||| || ||||| Sbjct 37090 GAGGAGCAGCGCGCCCGCGACCTGTTCTACGGCATGTGGATCCCCGACCTGTTCATGAAG 37149 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| ||| | ||| || | || ||||| || || ||||| ||| | Sbjct 37150 AGGGTGGAGTCCAACCAGGAATGGTCCCTGATGTGCCCCAACGACTGCCCCGGGCTGGAC 37209 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || || || | ||||| | |||| | | ||||| || |||||||||| Sbjct 37210 GAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTACACCGGCTACGAGGCGGCGGGCAAGGCC 37269 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | | || || | || | || ||||| | ||| | || ||| ||||||| Sbjct 37270 AAGCGCGTGGTGAAGGCACAGCAGGTGTGGCACGCCATCATCGAGTCGCAGACGGAGACG 37329 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || ||||||||||| | | ||||||| | |||| |||| |||||||||| |||| Sbjct 37330 GGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCT- 37388 Query 94552 GGGGTG-ATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 ||| || |||||| | || |||||||| ||||| ||||||| || |||||| Sbjct 37389 GGGCTGCATCAAGTCCAGCAACCTGTGCACGGAGATCATCGAGTACACCAGCGGGGACGA 37448 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | || ||||| ||||||| ||||||| | || || | || || || | Sbjct 37449 GGTCGCCGTGTGCAACCTGGCCTCCATC--GCGCTCAACAT--GTACGTGACG------- 37497 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG--GATGGTCTTG 94728 | | | || | ||||| | || |||| | | | || | ||| ||| || | Sbjct 37498 GCCGAGCGC-ACCTTCGACTTCAAGAAGCTGGCCAGCGTCAC--CAAGGTGATCGTGAAG 37554 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | ||||| ||||||||||| || ||||||| |||| || ||| Sbjct 37555 AACCTCAACAAGATCATCGAGGTCAACTTCTACCCGGTGCCGGAGGGCGAGAGGTCGAAC 37614 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 | ||| ||||| |||||||||||||| ||||| | || ||||| | | ||||| Sbjct 37615 AAGCGGCACCGGCCTATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGATG 37674 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || |||| ||| || || | | || | |||| ||||| | ||| Sbjct 37675 CGCTACCCCTTCGAGAGCCCGGAGGCCCAGCTCCTCAACAGGCACATCTTCGAGACCATC 37734 Query 94909 TATTACGGGGC-CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || ||| ||| | || | | | | | | ||| |||| ||||| |||| Sbjct 37735 TACCACGCGGCGCTGGAGTCGAGCTG-CGAGCAGGC---GGCGGAGCTGGGGCCGTACGA 37790 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 ||| || || | ||| | |||| | | |||| |||| | ||||| |||| Sbjct 37791 GACGTACCCGGGCTGCCCCGTCAGCAAGGGGGTGCTGCAGTACGACATGTGGGGCGTGAC 37850 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATG-TTATCAAACACGGTGTGA 95086 ||| | | || | |||| ||||||| | | || | | ||| ||||| |||| Sbjct 37851 CCCCACCGACCTCTGGGACT-GGAAGCTGCTCAAGGAGAAGATCGCCAAGCACGGCGTGA 37909 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| ||||| |||| ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 37910 GGAACAGCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCACAGATCCTGGGCAACA 37969 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 ||||||| |||| |||| |||| |||| |||||| | | |||||||| | || || | Sbjct 37970 ACGAGTCCATCGAGCCCTACACCAGCAACCTGTACACCCGCAGGGTGCTCTCGGGAGAGT 38029 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 ||| |||||||| ||| | || |||||| ||| ||| ||||| | || Sbjct 38030 TCCAGATCATCAACCCCCACATGCTGAAGGACCTCACGGAGAGGGGGCTGTGGAGCGAGG 38089 Query 95267 AGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 || | |||||||| || | ||||| ||||| ||| | ||| Sbjct 38090 AGATGAAGAACCAGCT-CATCGCGCAGAACGGATCCATTCAG 38130 >seq3564 Length=3914096 Score = 100 bits (110), Expect = 3e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| |||| |||| ||||| |||| ||||||||||| |||||||| || |||||| Sbjct 3071709 CACGGGGTGAGAAACAGTCTGCTGCTGGCTCCCATGCCCACCGCCTCCACCGCCCAGATC 3071768 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCT 95195 || || ||||||||||| | || |||| |||| |||| | ||| ||| || |||| || Sbjct 3071769 CTGGGTAACAACGAGTCCATTGAGCCCTACACCAGCAACATCTAC-ACACGCAGGGTTCT 3071827 Query 95196 CGCCGGGGAATTCC 95209 | ||||| |||| Sbjct 3071828 GTCTGGGGAGTTCC 3071841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492079974334920