Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_011202.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq213072 201 3e-47 seq272266 188 2e-43 seq256110 183 7e-42 seq295602 80.6 6e-11 >seq213072 Length=511 Score = 201 bits (222), Expect = 3e-47 Identities = 253/342 (74%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5992 TCTGCACTCAGGTTGTCAGTTTCTAAGAACGAGGAGGATTTGATATTGACAGTGCCGGTT 6051 ||||| || || ||||||||||| || |||||||||||||||||||| || ||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6052 GAGATGCCTTTCATGAGGTTTTCGTCCATTTGGTCAGAAAACACAAtttttttATTGTCA 6111 | ||||||||| | | | | ||||| ||||||||||| |||| ||||| ||||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAA-GCAATCTTTTT-GTGTCA 291 Query 6112 AGTTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAATGGATCGCATG 6171 || ||||||||||| || || || ||||||||||| | | ||||| ||||| |||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6172 GTTTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGGACATACTCG 6231 |||||||| ||| | || |||||||| ||||| |||||||| || || || || ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6232 CGTGCCAGGCACTTCCATTCGGGGAAGATAGTTGTTAATTCATCTGGCACGATTCTCACT 6291 || || | |||| |||||| ||||||| || || || || ||||| | ||| Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6292 TGCCACCCTCGATTATGCAAGGTAATTAAATCCACACTGGTG 6333 |||| || || || |||| ||| | | || || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq272266 Length=497 Score = 188 bits (208), Expect = 2e-43 Identities = 342/490 (70%), Gaps = 9/490 (2%) Strand=Plus/Plus Query 6337 ACCTCGCCTCGAAGGGGTTCATTGGTCCAACAGAGCCTACCTCCTTTCCTAGAACAGAAA 6396 ||||| || || ||| | || |||||||| ||||| | || || || | || ||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6397 GGGGGAAGTGGGTCTAGCATAAGT-TCATCGGGAGGGTCTGCATCCATGGTAAAGATTCC 6455 || || || ||||||||| | || || || || |||||||| |||| |||||||| || Sbjct 64 GGCGGTAGGGGGTCTAGC-TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6456 CGGAAGTAAATCCTTATCAAAATAGCTGATGG-GAGTGGGGTCA--TCTAAGGCCATTTG 6512 || || | | || || ||| || | | || |||| ||| || Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6513 CCATTCTCGAGCTGCCAGTGCGCGCTCATATGGGTTAAGGGGACTGCCCCATGGCATGGG 6572 |||| | || || || || |||||||| |||||||| || || |||||||||||||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6573 ATGGGTGAGTGCAGAGGCATACATGCCACAGATGTCATAGACGTAGATGGGATCCTCAAA 6632 |||||||| || ||||| |||||||| || ||||| || |||| || ||| | ||| | Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCT-CTCTGA 300 Query 6633 G-ATGCCTATGTAGGTTGGATAGCATCGCCCCCCTCTGATACTTGCTCGCACATAGTCAT 6691 | || || | || || || ||||||| || || | ||| || || ||||| || || | Sbjct 301 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGT 360 Query 6692 ATAGTTCATGTGATGGCGCTAGCAGCCCCGGACCCAAGTTGGTGCGATTGGGTTTTTCTG 6751 ||||||| || || || || || || | ||||| | |||| | || ||| | |||| Sbjct 361 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTG 420 Query 6752 TTCTGTAGACGATCTGGCGAAAGATGGCGTGAGAATTGGAAGAGATGGTGGGTCTTTGAA 6811 || | || | ||||| | |||||||| || || ||||| || ||||| || | || | Sbjct 421 CTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGA 479 Query 6812 AAATGTTGAA 6821 | | |||||| Sbjct 480 AGACGTTGAA 489 >seq256110 Length=496 Score = 183 bits (202), Expect = 7e-42 Identities = 260/365 (71%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 10782 CTGGACTTGGAAGAGGGCGAAGGACTGGCACGTCTAGGTGCGCCTTCACCCGAGCGGCAT 10841 ||||||||||| |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 10842 CCGCGAGTTCAACTGAAAAAAGATTCTCGCGAGGCGTATGTGCCCCAACAGAACCTATTT 10901 || | || || ||||| ||| | || |||||||| ||||| | |||||||| ||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 10902 AGAGACAGAAGCGGCGAGGAGCCGGAGGAGATGCGAGCTTCCCGCTTTAACGCGGGTCGT 10961 | ||| | || |||||||| ||||||||||| | | || |||| || || Sbjct 247 CGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGC 188 Query 10962 GAGCTGCGTCACGGTTTGGACCGAAGACGAGTGTTGCGGGACGAGGATTTCGAAGTTGAT 11021 |||||||| || || || | || || || |||| || ||||| || || || Sbjct 187 GAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGAC 128 Query 11022 GAAATGACAGGGATCAGTCCTGCCAGGGCACACGTGGCTGCAGCCAACCTTGTATCGGCT 11081 | || ||||| ||||| || | ||||||||||| || ||| |||| ||| | || Sbjct 127 GCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCA 68 Query 11082 TACGAGCAGACAGTAAAGGAAGAGCGTAACTTCCAAAAGTCTTTTAATAATCATGTGCGA 11141 ||||||||||| || || | ||| ||||||| ||||| ||||| || || ||||| Sbjct 67 TACGAGCAGACGGTGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGT 10 Query 11142 ACCCT 11146 || || Sbjct 9 ACGCT 5 >seq295602 Length=499 Score = 80.6 bits (88), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 14858 TATCGCAGTTGGTATCTTTCGTACAATTATGGCGATCCCGAAAAAGGAGTGCGTTCCTGG 14917 || ||||| ||||| ||| | ||||| || ||||| || | | ||| | || || ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 14918 ACATTGCTCACCACCTCAGATGTCACCTGCGGAGCAGAGCAGGTCTACTGGTCGCTTCCA 14977 || |||| ||| | || || |||||||| | |||||||||||||||||| | ||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 14978 GACATGATG 14986 | ||||||| Sbjct 491 G-CATGATG 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110654685193144