Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5389 334 8e-87 seq742 91.5 1e-13 seq3564 89.7 5e-13 >seq5389 Length=131951 Score = 334 bits (370), Expect = 8e-87 Identities = 934/1410 (66%), Gaps = 56/1410 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | || || | ||| ||||| ||||| || || || ||||||| ||||| Sbjct 37997 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTG 37938 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || ||||||| || | ||||| | | Sbjct 37937 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGC 37878 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| || | | || ||| || ||||||||||||||| | ||| || Sbjct 37877 AGCTTCCAGTCCCAGAGGTCGGTGGGGGTCACGCCCCACATGTCGTACTGCAGCACCCCC 37818 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| | ||| | |||| ||| | ||| || | ||| | ||||| Sbjct 37817 TTGCTGACGGGGCAGCCCGGGTACGTCTCGTA-CGGCCCCAGCTCCGCCGCCTGCTCGCA 37759 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| | ||| ||||| | | ||| ||||| ||| ||| || | ||||| | || Sbjct 37758 GCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGC 37699 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||||||| | || ||||| ||| | |||||||||||||| ||||| | || Sbjct 37698 CTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCC 37639 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCT-CGCTATGGGATAGTGAT 153492 || |||||| || || ||| || ||| | | ||||| || || | || ||| | Sbjct 37638 GATGCCGATAGGCCGGTGCCGCTTGTT-CGACCTCTCGCCCTCCGGCACCGGGTAGAAGT 37580 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTA---TCGCCTTAAGTT 153549 || ||||| || ||||||||||| ||| | ||| || || | | ||| || | Sbjct 37579 TGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCC---AGCT 37523 Query 153550 TCTCGAAATCATAGGT-CATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCC 153608 ||| ||| || |||| | | | || | |||| ||| || | || || || ||| Sbjct 37522 TCTTGAAGTCGAAGGTGCGCTCGGCCGTCACGTA--CAT--GTTGAGCGCGATGGAGGCC 37467 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG 153668 || || || ||||| ||| || || | |||||| | |||||| | ||| |||||| Sbjct 37466 AGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTG 37407 Query 153669 CTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAG 153728 ||| | || ||| ||||| || ||||| ||||| ||||| ||||| ||||| ||| || Sbjct 37406 CTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAG 37347 Query 153729 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGCA 153780 |||||||| || ||| ||||| |||| |||| ||| | ||| ||| Sbjct 37346 AGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACC--TGCT 37289 Query 153781 GGTCCTGCGCTCGCACCCGCT--GCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAG 153838 | ||| | | ||| |||| ||| | || || ||| |||||| | |||||| Sbjct 37288 GTGCCTTCAC---CACGCGCTTGGCC--TTGC--CCGCCGC-CTCGTAGCCGGTGTACAG 37237 Query 153839 TCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 ||||||||| || || |||| ||| | || ||||| || | | || |||||||| Sbjct 37236 CTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAG 37177 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 ||||| | || || | || | ||||||||| || || | ||| | |||| Sbjct 37176 GGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTA 37117 Query 153959 CATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCAC 154015 | ||||||| |||| ||| |||||| |||| |||| ||||| | | | || Sbjct 37116 GAACAGGTCGCGGGCGCGCTGC--TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAC 37059 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TT 154072 | | ||| ||||||||||||||| || | ||| | ||| | ||| || ||| || Sbjct 37058 TCGA-AGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTT 37000 Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132 |||||||| || |||| |||| || | |||||| | ||||||| |||||| ||||||| Sbjct 36999 GCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCC 36940 Query 154133 GCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192 | | | | |||||||||| ||| | ||| || |||||| |||||| | Sbjct 36939 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCG-----GATGCAGCTC 36885 Query 154193 A-----ACGCCAATGCCG-CCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCT 154246 | ||||| |||||| |||||| |||| || ||| ||||| | ||||| Sbjct 36884 ACCGCCACGCCGATGCCGCCCGCCG-ACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTC 36826 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||||||||| |||||||| ||||| | | | |||| ||| || | | ||||| Sbjct 36825 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGG 36766 Query 154307 AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT 154366 | || || || || || ||||| |||||||| ||| || | || Sbjct 36765 TCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGACAG 36706 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 || | |||||| || | |||| | ||||| || ||| ||||| | ||| || | Sbjct 36705 CAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCT 36646 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||| |||||||||||||| || || || || Sbjct 36645 CATCAGCATGTGCTGCGGCCGCTCCGCCAC 36616 >seq742 Length=2242023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || | ||| | | | || || || || ||||||||||| Sbjct 1675286 GCCACCCCTCAGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1675227 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || |||| |||| || | ||| || || || || Sbjct 1675226 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGG 1675167 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | ||| | |||||| | | |||||| Sbjct 1675166 AATGCCTTCCTTGTCCTGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCAC 1675107 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | || || |||||||| ||||| ||||| |||||||||| Sbjct 1675106 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATGG 1675057 >seq3564 Length=3914096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||| | ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 3070153 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 3070094 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || | ||||| ||||| ||| |||| ||||| || ||| ||||| Sbjct 3070093 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTC 3070042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493610950639440