Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5389 149 6e-31 seq3564 98.7 9e-16 >seq5389 Length=131951 Score = 149 bits (164), Expect = 6e-31 Identities = 973/1529 (64%), Gaps = 71/1529 (5%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 |||||| | ||| ||||| || | ||| || | | |||| |||||||||| | | Sbjct 38044 GGTTGATGATCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGG 37985 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 |||||| ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| Sbjct 37984 GCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCA 37925 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCC---GTAGTTTGGACCAA 146238 ||||| ||| ||||||||||| ||| | ||||| ||| | || || ||| Sbjct 37924 GCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTCCTTGAGCAGCTT---CCAG 37869 Query 146239 TTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAAC 146298 | ||| | | || ||||| | | ||||||| |||| || | Sbjct 37868 TCCCAGA---GGTCGGTGGGGGTCACGCCCCACATGTCGTACTGCAGCACCCCCTTGCTG 37812 Query 146299 AGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCT 146358 | ||||| | ||||| || || || || | ||| | |||||||| | Sbjct 37811 ACGGGGCAGCCCGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGAC 37752 Query 146359 TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA---GTTGACGCTCCTGGCCTCC 146415 ||||| |||| ||| |||||||| || |||| ||||| | | ||||||| Sbjct 37751 TCCAGCGCCGCGTGGTAGATGGTCTC---GAAGATGTGCCTGTTGAGGAGCTGGGCCTCC 37695 Query 146416 TCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGAC 146474 ||| ||| ||||| || || | || | ||||||||||| || ||||| | |||| Sbjct 37694 GGGCTCTCGAAGGGG-TAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGAT 37636 Query 146475 ACCAACGGGGCGGTGTTTCTTGTT--ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTG 146532 || | || ||||| |||||| || |||| | || ||| ||| ||| |||| Sbjct 37635 GCCGATAGGCCGGTGCCGCTTGTTCGACCTCTCGCC-CTCCGGCACCGGG-TAGAAGTTG 37578 Query 146533 CTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACA 146592 ||||||||||||||||| || ||||| | || || | | |||| Sbjct 37577 ACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTG 37518 Query 146593 TAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTA 146652 |||| || || | | ||| ||| || |||||| ||||| ||||||| ||| Sbjct 37517 AAGTCGAAGGTGC--GCTCGGCCGTC-ACGTACATGTTGAGCGCGATGGAGGCCAGGTTG 37461 Query 146653 CATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCAC 146712 || ||||| ||||||| | | |||| | ||||| | ||| ||||||||| || Sbjct 37460 CACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGAC 37401 Query 146713 TTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGC 146769 |||||| ||||| || | ||||| || |||| ||||||| ||||||||||||| Sbjct 37400 TTGATGCAGCCCAGGTTCTGCTGGTTGCT---CTTGCGGTTGCAGGCGTCCTTGTAGAGC 37344 Query 146770 ATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CTG-G 146827 ||||| || || || || | | ||||| |||| | || | || ||| | Sbjct 37343 ATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATG--GCGTGCCACACCTGCTGTG 37286 Query 146828 CCTTTACTTGTCTTTCGTACAGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAAA-- 146885 |||| || | | | | | ||||| ||||| | ||||| Sbjct 37285 CCTTCACCACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACT 37226 Query 146886 ACTAGAACC-GTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATT 146944 || || | ||||||| || ||||| | | ||||| || | ||| ||||||| Sbjct 37225 CCTCCCCCCAGCACTCGTC---CAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATT 37169 Query 146945 CTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGT 147004 | | || || ||| | | ||| |||| ||||| ||||| | ||| | || || Sbjct 37168 CCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGT 37109 Query 147005 CGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACATCGTAAAT 147062 |||| || | || ||||| |||| |||| | || ||| | |||| ||| | | Sbjct 37108 CGCGGGCGCGCTGC-TCCTCCTTGCCCGTGTT-CTTCTTCAGCTCCAGGAACTCGAAGAC 37051 Query 147063 TTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTG 147119 || | ||||| ||||||| ||| ||||| || || ||| || |||||||| Sbjct 37050 GTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTG 36991 Query 147120 ATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTT 147179 || |||| |||| || |||| ||| | || || | ||||| ||| |||||| ||| || Sbjct 36990 GTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTT 36931 Query 147180 ---TGTGGTGCCGTTGTATTGAGCGC----TGACGC-TTTGCACGCTCAGC------CCG 147225 |||||||| | || ||| | || ||| |||| ||||| | ||| Sbjct 36930 GCCGTTGGTGCCGGCG-ATGTAGCTCCCCGTGGCGCGGATGCA-GCTCACCGCCACGCCG 36873 Query 147226 AGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCG 147285 | || || || || || || | ||| ||| | | || | ||||||||| ||| Sbjct 36872 ATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCG 36813 Query 147286 ATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCC 147345 |||||||| ||||| ||| ||||||| || | | || || || ||||| Sbjct 36812 ATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGCCG 36753 Query 147346 GCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTGCCCAGACTCATCAATTGATACG 147403 || ||||||||||| ||||||||||||| | | | || || || | |||| Sbjct 36752 GCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGA--CAGCAGGTTGTACG 36695 Query 147404 TTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGT 147463 | || | |||| | ||| ||| ||| ||| || || | ||| ||||||| Sbjct 36694 TCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGT 36635 Query 147464 GCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGTT 147522 |||| || || ||||| | | | | |||| || | || || | | | | ||| || Sbjct 36634 GCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGCAGGTA-CGAGCGCTCCAGCGTC 36576 Query 147523 TTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 ||||| || ||| | |||||| | |||| Sbjct 36575 TTGAAGCCGAAGAAGTTGTAGGAGAAGTC 36547 >seq3564 Length=3914096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||| ||||| | ||| |||||||||||||||||| |||| Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || || | ||||| || | ||||||||| |||||||||||| ||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGG 3070054 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146071 ACCTGAAACTCGCCGGCGAGAACGC-GCCTCAGATACACGTTGCTGGTGAACGGCTCGAA 146129 ||||| ||||| || | ||||| | || | | || | |||||||||| | ||||| | Sbjct 3071845 ACCTGGAACTCCCCAGACAGAACCCTGCGTGTG-TAGATGTTGCTGGTGTAGGGCTCAAT 3071787 Query 146130 CGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAA 146189 |||||||||||||| || ||||| || || | ||||| |||||| |||| ||||| Sbjct 3071786 GGACTCGTTGTTACCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGAGCCAGCAGCAG 3071727 Query 146190 AGAGTTTCTCACGCCGTGTCT 146210 | ||||||||| ||||| || Sbjct 3071726 ACTGTTTCTCACCCCGTGCCT 3071706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472960276494480