Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5389 122 8e-23 >seq5389 Length=131951 Score = 122 bits (134), Expect = 8e-23 Identities = 872/1398 (62%), Gaps = 18/1398 (1%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || || || || ||||| ||| | || || | ||| | ||| | Sbjct 36613 AAGGTGGCGGAGCGGCCGCAGCACATGCTGATGAGGGTGGCGGTGGGCATCCACAAGAGG 36672 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| || || ||| | || |||| | || | ||||||||||| Sbjct 36673 GACATCGACGCCGCCGTGGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGCACGCC 36732 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| ||||| ||||||||| || || ||| | || || |||| Sbjct 36733 TCGCCCACGCTGTTCAACGCCGGCACCAACCGACCGCAGCTCAGCAGCTGCTTCCTGCTG 36792 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || | | |||||| | || Sbjct 36793 GCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGCTCATC 36852 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | |||||||| |||||| ||| | | | | | | || ||| | Sbjct 36853 TCCAAGTCGGCGGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCGCCACGGGGAGCTAC 36912 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| ||||| |||| | | || ||| || | |||||||||| || ||||| ||| Sbjct 36913 ATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCCATGCTGCGCGTGTACAACAAC 36972 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| |||||||||||||| ||| || || | || || || || Sbjct 36973 ACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGCCCCGGGGCCTTCGCCATGTACCTG 37032 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 || || ||||||| || || | ||| || | | | || |||| ||| ||| Sbjct 37033 GAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAG 37092 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || || |||||||| |||| |||| | ||| | ||||| |||| ||| | Sbjct 37093 GAGCAGCGCGCCCGCGACCTGTTCTACGGCATGTGGATCCCCGACCTGTTCATGAAGAGG 37152 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGAC 123494 || | | || | ||||| || ||||| ||| | || ||||| || ||| Sbjct 37153 GTGGAGTCCAACCAGGAATGGTCCCTGATGTGCCCCAACGACTGCCCCGGGCTGGACGAG 37212 Query 123495 GTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGG 123552 | || | ||||||| || ||||| | |||||| | ||||| || | Sbjct 37213 TGCTGGGGGGAGGAGTTTGAGAAGCTGTACACCGGCTACGAGGCGGCGGGCAAGGCCAAG 37272 Query 123553 TTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCG 123612 || ||| ||||| | ||| | || ||||| | || || || | Sbjct 37273 CGCGT--GGTGAAGGCACAGCAGGTGTGGCACGCCATCATCGAGTCGCAGACGGAGACGG 37330 Query 123613 GAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGG 123672 | ||||| |||||||||||||| |||||||||||| | || | ||| ||| ||| ||| Sbjct 37331 GCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGG 37390 Query 123673 GAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAG 123732 | || || | || || || ||| | || || ||||| |||| | | || | | Sbjct 37391 GCTGCATCAAGTCCAGCAACCTGTGCACGGAGATCATCGAGTACACCAGCGGGGACGAGG 37450 Query 123733 TGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGT-TGCGTCGAAAACG---GCGCT 123788 | |||||||| || |||| || || ||| | | | | ||| || || | Sbjct 37451 TCGCCGTGTGCAACCTGGCCTCCATC-GCGCTCAACATGTACGTGACGGCCGAGCGCACC 37509 Query 123789 TTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATT 123848 || | ||| | | ||| || | || || | || ||||| | ||||| || Sbjct 37510 TTCGACTTCAAGAAGCTGGCCAGCGTCACCAAGGTGATCGTGAAGAACCTCAACAAGATC 37569 Query 123849 ATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG-TCTAATTTGAAACACAGACC 123907 ||||| || || || || || || ||| | ||| | || || | ||| | || Sbjct 37570 ATCGAGGTCAACTTCTACCCGGTGCCGGAGG-GCGAGAGGTCGAACAAGCGGCACCGGCC 37628 Query 123908 GGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGA 123967 |||| | ||| | || || |||||||||| || | || ||||| || | ||| Sbjct 37629 TATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGATGCGCTACCCCTTCGA 37688 Query 123968 AAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTT 124027 ||| || || || | || || | ||| || ||| || || || ||| || | Sbjct 37689 GAGCCCGGAGGCCCAGCTCCTCAACAGGCACATCTTCGAGACCATCTACCACGCGGCGCT 37748 Query 124028 GGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCC 124087 |||| |||||||||| | ||| | || ||||||| | ||| ||||| |||| Sbjct 37749 GGAGTCGAGCTGCGAGCAGGCGGCGGAGCTGGGGCCGTACGAGACGTACCCGGGCTGCCC 37808 Query 124088 GGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGA 124147 | ||| || | ||||||||||||||||| | || || || | | ||||| Sbjct 37809 CGTCAGCAAGGGGGTGCTGCAGTACGACATGTGGGGCGTGACCCCCACCGACCTCTGGGA 37868 Query 124148 CTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTG 124205 ||||| | | || | | | |||| | |||||| || | ||| ||| || || Sbjct 37869 CTGGAAGCTGCTCAAGGA--GAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTG 37926 Query 124206 GCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCG 124265 ||| |||||| || || |||| || || || | || |||||||| ||| ||||||| Sbjct 37927 GCGCCCATGCCCACCGCCTCCACGGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCC 37986 Query 124266 TTCACTAACAATTTGTAC 124283 | ||| | ||| ||||| Sbjct 37987 TACACCAGCAACCTGTAC 38004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449588220352920