Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4690 138 2e-27 seq3090 111 2e-19 >seq4690 Length=434716 Score = 138 bits (152), Expect = 2e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||| ||||||||| |||| |||||||| |||| ||| ||| || Sbjct 387724 CCGCCGAAGGTGCTGGGCTTCCAGTACTCCGGAGAGCAGATTGGGTTCCCCAGGAGGCCC 387783 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | || |||| ||||||| ||| | ||| |||| ||||||||||| ||| | Sbjct 387784 TTGAGAGAGTACGGGGCCCCCATCTCCACCATGGTCTCCCCGAAGATGGCGTTGGGCCTG 387843 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || |||| | ||| | |||||| || || || || |||| ||||| | | Sbjct 387844 GGCTTCTCCACGAGAAGGCCTGGGTAGAGCTCCACGGCGTCCACGTGTCCATACATCTCC 387903 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTA 9176 |||| | | || || |||||| ||||||||| Sbjct 387904 TCCAGCACCGCTGCCATCTCCGTCTCACCTA 387934 Score = 105 bits (116), Expect = 1e-17 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||||| ||||||| |||| | ||| |||||||||| | || ||||||||| Sbjct 388704 TCGGGCATCAGAGGATGCCAGTGGTACAAGGTGTTGAACTCGGAGGAGATGCGGTTCTGG 388763 Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| ||| || ||| |||||| | |||||||||||| | |||| ||||| ||| | Sbjct 388764 TACTGGAAGCGCTGGT--TGAACAGCAGCTCCGGGTCAAACTTGAGCTTGAAGTTGTATC 388821 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| || ||||| || || Sbjct 388822 CGCTCAGGTGCTGCACGTA 388840 Score = 86.0 bits (94), Expect = 9e-12 Identities = 174/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | | ||| || || ||||| || || | | ||||||| |||| |||||||| Sbjct 389252 TCACCGATCAGGATGAGCCGCGTGGTCTGGAAGAGCCGCTCGTCGTCCCAGTCCGGGTGC 389311 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || | || || ||||| || | |||||| || | |||||| | |||||||||||| Sbjct 389312 ACGCCCCTCAGGACGTCGCACACGCGGTTGTGCTCGCGCAGCCAGAGGGTGGCGTACATG 389371 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGC 9894 || | || || || | || || | || | ||||| || |||||| | || ||||| Sbjct 389372 ATGAGGCCGGGGACCAGGCCGAAGGCCTCGTGGCCCACAGCCAAGCGCTGCTCCTCGGGA 389431 Query 9895 ACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG---ACGGTGGGGGGATACATT 9951 || | || | || |||| | || | | | || || || ||||| ||||| Sbjct 389432 ACGTGAGGGGGGTAGTGCAT---CTCCGCGCCCACACTGGCCACCGTCGGGGGGTACATG 389488 Query 9952 TCACCGTCAATAACCTG 9968 || |||||||| |||| Sbjct 389489 TCTCCGTCAATGTCCTG 389505 >seq3090 Length=57297 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || |||||||| || || | | || ||||| ||||| || ||||||||| |||| ||| Sbjct 18460 TTAACGATGTCGAAGCCCGCCGCGCCCCCGAACGTGCTCGGCTTCCAGTACACCGGCGAG 18519 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 |||||| |||| ||| ||| || || | ||| ||||| ||||||| ||| | |||||| Sbjct 18520 CAGATGGGGTTCCCCAGGAGACCCTTGAGGGAGAACGGGGCCCCCATCTCCACCATGCTC 18579 Query 9062 TCACCGAAGATGGC 9075 || ||||||||||| Sbjct 18580 TCGCCGAAGATGGC 18593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719861238901800