Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_012959.1 Length=34920 Score E Sequences producing significant alignments: (Bits) Value seq213072 318 1e-82 seq272266 302 1e-77 seq256110 262 9e-66 >seq213072 Length=511 Score = 318 bits (352), Expect = 1e-82 Identities = 279/342 (82%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5933 TCGGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATGTTGGCCTGCCCTGCC 5992 || || || || ||||||||||| | |||||||||||||||||| || |||| || || Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5993 GCAATGCTTTTTAGGAGACTTTCATCCATTTGGTCAGAAAAGACTAtttttttATTGTCA 6052 | |||| ||| ||| ||||||| |||||||||||| | || ||||| | |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6053 AGCTTGGTGGCAAAGGAGCCATAGAGGGCGTTGGAGAGAAGCTTGGCGATGGATCTCATG 6112 |||||||||||||| || || |||||||||||||| || | |||||||||||| | || | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6113 GTCTGATTTTTGTCACGGTCGGCGCGCTCCTTGGCCGCAATGTTGAGCTGGACATATTCG 6172 || || |||||| | || |||||||||||||||||||| ||||| ||||| || |||||| Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6173 CGCGCAACGCACTTCCATTCGGGAAAAACAGTGGTGCGCTCGTCGGGCACAATCCTGACG 6232 |||||||||||| ||||||||| || || |||||||||||||||||||| | ||| Sbjct 411 CGCGCAACGCACCGCCATTCGGG-AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6233 CGCCAGCCTCGGTTATGCAGGGTGACCAGGTCCACGCTGGTG 6274 ||||| || ||||| ||||||||||| ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq272266 Length=497 Score = 302 bits (334), Expect = 1e-77 Identities = 372/500 (74%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6278 ACCTCGCCGCGCAGGGGCTCGTTAGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAAAAA 6337 ||||| ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| || Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6338 GGTGGTAACACATCAAGCAAATGCTCGTCAGGGGGGTCCGCATCGATGGTAAAGATGCCC 6397 || |||| || ||| |||||| |||||||| || || | |||||||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGAC-CCC 122 Query 6398 GGACAG-AGTTCCTTGTCAAAATAATCAATTTTTAAGGATGCAT-CA--TCCAAGGCCAT 6453 || ||| || | ||| || || || || || | || | | || || | ||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTG 179 Query 6454 TTGCCAGTTGCGGGCGGCCAGGGCTCGCTCGCAGGGGTTCAGGGGCGGACCCCAGGGCAT 6513 ||||| ||||||||| || || |||||| | ||||| || || |||||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6514 GGGATGCGTAAGCGCGGAGGCGTACATGCCGCAGATGTCATACACATAGATGGGCTCCGA 6573 ||| || || ||||||||||||||||||||||| ||||| || || | || |||||| Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6574 GAGGATGCCGATGTAGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTC 6633 ||| || || | || || || || || | || ||||||||||||||||||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6634 ATACAACTCATGCGAGGGTGCCAAGAAGGCGGGGCCAAGATTGGTGCGCTGGGGCTGCTC 6693 || | || |||||||| || | || | |||| || || ||| | || ||||||||| Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6694 GGCGCGAAAGACGATCTGGCGAAAGATGGCATGCGAGTTGGAGGAAATAGTGGGCCGTTG 6753 || || ||| | ||||| | ||||||||||| |||||||| || || || || || || Sbjct 419 TGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6754 GAAGATGTTAAAGTGGGCGT 6773 ||||| ||| ||| ||||| Sbjct 478 GAAGACGTTGAAGCTGGCGT 497 >seq256110 Length=496 Score = 262 bits (290), Expect = 9e-66 Identities = 277/364 (76%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 10671 TGGACTTGGAAGAGGGCGAAGGGCTGGCAAGACTGGGGGCACCGTCCCCGGAGCGACACC 10730 |||||||||| |||||||| || ||||| | || || || || || || ||||| |||| Sbjct 366 TGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACC 307 Query 10731 CCCGCGTGCAGCTGCAAAAGGACGTGCGCCCGGCGTACGTGCCTGCGCAGAACCTGTTCA 10790 | | ||||||||| | || ||| |||||||||||| |||||||||||| Sbjct 306 CAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTC 247 Query 10791 GGGACCGCAGTGGGGAGGAGCCCGAGGAGATGCGCGACTGCCGGTTTCGGGCGGGCAGGG 10850 | |||||| || |||||||||||||||||||| || | ||| | || || | | Sbjct 246 GCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCG 187 Query 10851 AGCTGCGCGAGGGCCTGGACCGCCAGCGCGTGCTGCGCGACGATGATTTCGAGCCGAACG 10910 ||||||| | |||||| | ||| |||| |||||||||| || || || ||||| ||| Sbjct 186 AGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACG 127 Query 10911 AGCAGACGGGGATCAGCCCCGCGCGCGCGCACGTGGCGGCGGCCAACCTGGTGACGGCCT 10970 || || ||||| || ||||||||||| ||||||||||| ||| ||||||| || || | Sbjct 126 CGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCAT 67 Query 10971 ACGAGCAGACGGTGAAACAGGAGCGCAACTTCCAAAAGAGTTTCAACAACCACGTGCGCA 11030 |||||||||||||||| |||||| |||||| ||| || || |||||||||||||| | Sbjct 66 ACGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGTGCGTA 9 Query 11031 CCCT 11034 | || Sbjct 8 CGCT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111055838672668