Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5389 131 2e-25 seq3661 102 1e-16 seq3564 98.7 1e-15 seq300154 91.5 2e-13 seq300152 91.5 2e-13 >seq5389 Length=131951 Score = 131 bits (144), Expect = 2e-25 Identities = 825/1297 (64%), Gaps = 36/1297 (3%) Strand=Plus/Minus Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 |||| | ||||| ||||| | | |||| ||||| |||| ||| || || |||||||| || Sbjct 37998 GTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGT 37939 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 ||||||||| |||| || |||||||| | | || | || |||||||| Sbjct 37938 GGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAG 37879 Query 116028 GGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 | |||||| || | | | | || | | ||||||| || |||| || | | Sbjct 37878 CAGCTTCCAGTCCCAGAGGTCGGTGGGGGTCACGC-CCCACATGTCGTACTGCAGCACCC 37820 Query 116087 CTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 | | | |||| ||| | ||| | ||||| || || ||| || ||||| || Sbjct 37819 CCTTGCTGACGG-GGC-AGCCCGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTC 37762 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | |||||| ||| || || ||||| || || ||||| || ||| | || | || Sbjct 37761 GCAGCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTG 37702 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 |||||| | || || | | || || || || | || || || || || || Sbjct 37701 GGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCAC 37642 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAA 116323 |||| ||| || || || || | | | || ||| | | || || ||| || || | Sbjct 37641 GCCGATGCCGATAGGCCGGTGCCGCTTGTTCGACCT-CTCGCCCTCCGGCACCGGGTAGA 37583 Query 116324 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 116383 | || ||||| | | | || || || || || ||||| |||| |||| Sbjct 37582 AGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCT 37523 Query 116384 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 116443 | | | | || || |||| ||| | | || ||| | || ||||| || |||| Sbjct 37522 TCTTGAAGTCGAAGGTGCG---CTCGGCCGTCACGTACATGTTGAGCGCGATGGAGGCCA 37466 Query 116444 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT-- 116501 | || ||||| | | ||| ||| |||||||| || || ||||| |||| || Sbjct 37465 GGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGC 37406 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 || ||| | ||| ||||| ||||| || || ||| ||| || || |||||||| Sbjct 37405 TGGACT--TGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTA 37348 Query 116562 GAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT-CGG 116620 |||||| || ||||| ||||||||||| || |||| || || || | ||| || | | | Sbjct 37347 GAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACCTGCTG 37288 Query 116621 CGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAA 116680 | || ||| | ||||| ||| || ||||||| ||||| || ||||| Sbjct 37287 TGCCT-TCACCACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAA 37229 Query 116681 ACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739 |||| || ||| |||| ||| ||||| || | | || || | || |||||| Sbjct 37228 ACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCAT 37170 Query 116740 TGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAG 116796 | || | ||| |||| ||||||||| ||||| |||||||| | |||| |||| Sbjct 37169 T--CCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-TGCCGTAGAAC 37113 Query 116797 AGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855 || || || ||| ||| || | | ||| || || || ||||| || || | Sbjct 37112 AGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAGGAACTCGAA 37054 Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGC 116912 || || |||||||| || |||||||||| |||| | ||| ||| || | Sbjct 37053 GACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCC 36994 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| || || | |||||| ||| | ||||| ||||| || | | || | || Sbjct 36993 CTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGA 36934 Query 116973 TTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATAC 117031 | ||| || || || ||| | | | |||| | || | | || | Sbjct 36933 GTTGCCGTTGGTGCCGGCGATGTAGCTCCCCG-TGGCGCGGATGCAGCTCACCGCCACGC 36875 Query 117032 CAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCAT 117091 | || || || ||| |||| ||||| | ||||||| | |||| || ||||||| || | Sbjct 36874 CGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCT 36815 Query 117092 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC--TTGGTGT 117149 |||| ||| |||| | || | ||||||||||| | || || | |||||| Sbjct 36814 CGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTG- 36756 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || |||||||| || || || | ||||| ||||| Sbjct 36755 -CCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAAC 36720 >seq3661 Length=2364936 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||||||| |||||| |||||| ||||| || |||| ||||| Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | ||| ||||||||||| ||||| || |||||| ||||| | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 127659 C 127659 | Sbjct 460723 C 460723 >seq3564 Length=3914096 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||| |||||||||| ||| ||||| |||||| Sbjct 3071812 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAG 3071753 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || ||||||||||| |||| || || ||||| Sbjct 3071752 GCGGTGGGCATGGGAGCCAGCAGCAGACTGTT 3071721 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 ||| ||||| |||||||| | || ||||| |||| || | ||| |||||||| Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || ||||| || || ||| |||| || || ||||||||||| || |||||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCC 3070048 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||||||| ||||||| || || || | ||| || Sbjct 3070047 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACAC 3070012 >seq300154 Length=373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| ||||| ||||| |||||| ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | || ||||||||||||||||| || |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 127659 CAA 127661 ||| Sbjct 95 CAA 93 >seq300152 Length=362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| ||||| ||||| |||||| ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | || ||||||||||||||||| || |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 127659 CAA 127661 ||| Sbjct 95 CAA 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610229330725320