Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5389 217 2e-51 seq97661 107 3e-18 seq3564 89.7 8e-13 >seq5389 Length=131951 Score = 217 bits (240), Expect = 2e-51 Identities = 593/895 (66%), Gaps = 20/895 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||| ||||||| ||| | | |||| | |||| | ||||||||| Sbjct 37431 CTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCT 37372 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||||||||| |||| ||||||||| | |||| | ||| | || ||||| |||| || || Sbjct 37371 CTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTC 37312 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || | | | ||||| | | |||| |||| |||| | | | || | Sbjct 37311 GATGATGGCGTG-CCACACCTGCTGTGCCTTCACCACGCGCTTGGCCT---TGCCCGCCG 37256 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 |||||| ||||||||| | |||| || || | || |||||| |||| | Sbjct 37255 CCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGG 37199 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 | || | ||||| |||||||| ||||| ||| | | | |||||||| ||| |||| Sbjct 37198 GGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACA 37139 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| |||||||| |||||| ||||| || ||||| | | || | || || Sbjct 37138 GGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGT 37079 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| || || | | |||||||||||| ||||| | ||| ||| Sbjct 37078 TCTTCTTCAGCTCCAGG-AACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCG 37020 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || | |||||| || ||||||||||| ||| | | | |||| | || Sbjct 37019 AAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACG 36960 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 |||||||| |||||||| ||||||| | | ||||| |||| | |||| || Sbjct 36959 CGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTG 36900 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | | | | | ||| |||| || ||||| | |||||| ||| | |||||| Sbjct 36899 GCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCAC 36840 Query 205475 T-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCA 205533 | |||| || ||| ||||||||| ||||| |||||| || | || ||| |||| Sbjct 36839 TGCTTG-AGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCA 36781 Query 205534 CGAAGC-CAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 | || |||| | ||||||||| |||| ||| |||||||| |||||| ||| Sbjct 36780 -GCTGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGA 36722 Query 205593 AGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAA 205652 | | |||||| || |||| ||||||| || || | || ||| | Sbjct 36721 ACCACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGA 36662 Query 205653 TACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCT 205712 | || | || | |||||| | | ||| || || | |||| |||| | |||| | || Sbjct 36661 TGCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCT 36602 Query 205713 TGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 | ||||| || | | ||| || || || | | || |||||| ||| | |||| Sbjct 36601 TCAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTC 36547 Score = 165 bits (182), Expect = 1e-35 Identities = 321/471 (68%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || ||||||| | ||||| ||| | | || ||| || || ||||||||||| Sbjct 38098 TCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTGAGGTCCTTCAGCATGTGGGGGTTGA 38039 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||||||| || ||||| || ||||||| |||||| |||||||| ||||| | || |||| Sbjct 38038 TGATCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGA 37979 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | ||||| || ||| ||| ||||||||||| ||||| |||| Sbjct 37978 TGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCA 37919 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 || ||| | ||| |||| || || | | ||| || ||||||| | Sbjct 37918 GGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTTCCAGTCCCAGAGGT 37859 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | |||| ||||||||||||||||| |||| | | || | ||||| |||| |||| Sbjct 37858 CGGTGGGGGTCACGCCCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAGCCCG 37799 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA---CGAGGCGGCCATGGCGT 204488 ||||||| || ||| ||| | ||| ||| ||| ||| | | |||| Sbjct 37798 GGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGT 37739 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTTTA--ATCTGGCGGCCTCCGTTCCGTCAAA 204546 | ||| |||||||| ||||| || ||| | | ||| |||||||| | || || Sbjct 37738 G---GTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTG--GGCCTCCGGGCTCTCGAA 37684 Query 204547 CGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCC 204597 | | || || | || |||| |||| ||||||||| ||||| || Sbjct 37683 GGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCC 37633 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||| |||| |||||| || || ||||| ||||| Sbjct 38556 CCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCTGCGATGTGGATGTT 38497 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTT 204036 || |||||||| ||||||||| | | | | || || |||||||| || | |||||||| Sbjct 38496 GAGCGACTGGCTCTGGTCGATGTAGGCCCCGCGGTCCGCGGCCATCTTCAGGATGGTCTT 38437 Query 204037 CTGCGAAATCTCCCACACCGTCTTG 204061 ||| || |||||||||||||||||| Sbjct 38436 CTGGGAGATCTCCCACACCGTCTTG 38412 >seq97661 Length=869 Score = 107 bits (118), Expect = 3e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| ||| |||| |||||| | || ||||| || Sbjct 615 CTTCCAGCCGTAGAAGTGCATGCTGCTCAGCTTGCCGTAGTTGGGCTGTGCGATGTGGAT 556 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| || |||||||| ||||||||||| ||| || || || || ||||| |||| | || Sbjct 555 GTTGAGGGACTGGCTCTGGTCGATGAA-GGCTCCGCGGTCGGCAGCCATCTTGAGCACGG 497 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||||||| || ||||||||||| |||||| ||| Sbjct 496 TCTTCTGGGAGATCTCCCACACAGTCTTGTACA 464 >seq3564 Length=3914096 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || ||||| |||| || ||| | | |||| ||||| | || || | | Sbjct 3071843 CTGGAACTCCCCAGACAGAACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGA 3071784 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||| || | ||||| |||||| ||| ||||||||||||||||| ||||| Sbjct 3071783 CTCGTTGTTACCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGAGCCAGCAGCAGACT 3071724 Query 204316 GTTGCGCACACCGT 204329 ||| | ||| |||| Sbjct 3071723 GTTTCTCACCCCGT 3071710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790906814979120