Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq742 141 9e-29 seq92481 84.2 2e-11 seq3661 84.2 2e-11 >seq742 Length=2242023 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| ||| Sbjct 1675059 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 1675118 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||||| || |||| ||||| || || |||||| | || || Sbjct 1675119 GACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1675178 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 1675179 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1675238 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| | || || ||| |||| || ||| Sbjct 1675239 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTTCGTCTGAGGGGTGGC 1675286 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | | Sbjct 1678279 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1678338 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || ||| | || || Sbjct 1678339 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 1678397 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 1678398 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 1678457 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| || ||| | || || ||| | || |||||| |||| || |||| Sbjct 1678458 CATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCTGAGGGGAGGCC 1678507 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || || ||| | || || ||| |||| || | ||| ||||| Sbjct 1667474 AAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAGAGGCTGATCTTCGCCGGCAAG 1667533 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| |||||||||||||| || ||| |||| || ||| Sbjct 1667534 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCGACCCTCCAT 1667593 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| |||| || || Sbjct 1667594 CTTGTCCTTCGTCTGAGGGGAGG 1667616 >seq92481 Length=981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||| || ||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 199 GTAGGTATCTATGAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 256 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| ||||| || |||||| |||||| ||||| || ||| ||||| ||| Sbjct 257 AAACCGTAGAAGCAGCGGGCCTCGGTCACCTGAACTTCCTGGCTGAAGCGCTCCACC 313 >seq3661 Length=2364936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| |||||||| ||| ||| |||| |||||||| || || | || | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||| || ||| || || |||| || || || || ||||||| Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 133037 CCACCAGGCGCTCGCC 133052 | |||| ||||| || Sbjct 460723 CGACCACTCGCTCACC 460738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497500458007680