Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5389 136 5e-27 seq3564 111 2e-19 >seq5389 Length=131951 Score = 136 bits (150), Expect = 5e-27 Identities = 941/1493 (63%), Gaps = 60/1493 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | |||| || || | | || ||||| Sbjct 38097 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTGAGGTCCTTCAGCATGTGGGGGTTGAT 38038 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||||| ||| || | || | ||| | |||||||| || | Sbjct 38037 GATCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGAT 37978 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| ||||| |||||||| || ||||| || |||| || || Sbjct 37977 GGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAG 37918 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | | ||| |||||||| | | |||||| || | Sbjct 37917 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTTCCAGTCCCAGAGGTC 37858 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAGAACC 106137 | | || |||| ||||||| || | || |||||||| | | |||| || || || Sbjct 37857 GGTGGGGGTCACGC-CCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAG--CC 37801 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 | | ||||| || | || | | | ||| || ||||||| |||||| | || Sbjct 37800 CGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGC 37741 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | || ||| || || || | Sbjct 37740 GTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGG 37681 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 |||||| || || || | || || || || || || || | || ||||| | ||| Sbjct 37680 GTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTG 37621 Query 106318 TCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 ||| | || ||| | |||| | || |||| || || || || |||| || Sbjct 37620 CCGCTTGTTCGACCTCTCGCCCTCCGGCACCGGG-TAGAAGTTGACCTCGATGATCTTGT 37562 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 106436 | || || || | | ||| |||| || || | | || || ||||| Sbjct 37561 TGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCG-- 37504 Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 ||| | | || ||| | || ||||| || |||| ||||| || || ||| | Sbjct 37503 -CTCGGCCGTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGT 37445 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 || |||||||| | || || || |||| |||| ||| || |||| | Sbjct 37444 CCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGT 37385 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 ||| ||||| ||||| |||||| || ||||||||||||||||||||||| ||||||| Sbjct 37384 TCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCT 37325 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCC 106675 ||||||| |||| || || || | |||||| | | | | || || | | |||||| Sbjct 37324 CCGTCTGCGACTCGATGATGGCGTGCCACACCTGCTGTGCCT-TCACCACGCGCTTGGCC 37266 Query 106676 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 106734 ||| |||||||||| ||||| || ||||||||||| ||| | || ||| Sbjct 37265 TTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTC-CCCCCAGCACTCGTC 37207 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACCCGC 106792 || || || | || || || | || ||||||| || | ||| |||| | Sbjct 37206 CAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATT--CCTGGTTGGACTCCACCCTC 37149 Query 106793 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 106852 |||||||| ||||| || ||||||| | | || || || | || ||| || Sbjct 37148 TTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCC 37089 Query 106853 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 106911 | || ||| || | | ||| |||||||| | || || |||||||| ||||| || Sbjct 37088 TTGCCCGTGTT-CTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAG 37030 Query 106912 ATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 106964 || | |||| | || ||| | | ||||| || | || |||||||| | Sbjct 37029 GTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCC----TGGTCCACGTAGCGCGCCG 36974 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 107024 || ||| | ||||| ||||| || | | || | || | || || || || Sbjct 36973 TGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCC----- 36919 Query 107025 TACGAGATTTATTGGCTCTCACAT--CATGGATG---------TGCATCCCAATACCCCC 107073 | ||| || |||| | | | | ||||| || || || || || Sbjct 36918 --GGCGATGTA---GCTC-CCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCC 36865 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||| |||| ||||| |||| |||| | | || || | ||||| || | ||| ||| Sbjct 36864 CGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTC 36805 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTG 107191 ||||| |||| | |||||||| ||| | |||||||| |||||| || || ||| Sbjct 36804 GTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTG--CCGGCGTTG 36747 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 107250 || || || || | ||||| ||||| || | | |||| | || ||| ||||||| Sbjct 36746 AACAGCGTGGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCAGGTTGTACGTCTCCAC 36688 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | | || ||||| | ||||||||| | ||||| | ||| | ||||| Sbjct 36687 GGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGT 36635 >seq3564 Length=3914096 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| ||||| |||||||| | || || || |||| |||| | ||| || || || Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCC 3070048 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 |||||||||||| |||| || || || | |||||| Sbjct 3070047 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACAC 3070012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586828628457480