Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq272266 419 5e-113 seq213072 399 5e-107 seq256110 165 2e-36 seq295602 132 1e-26 >seq272266 Length=497 Score = 419 bits (464), Expect = 5e-113 Identities = 395/498 (79%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 6305 ACCTCGCCGCGCAGGCGCTCGTTGGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAGAAG 6364 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6365 GGGGGCAGCACGTCGAGCTGGTCCTCGGGCGGCGGGTCGGCGTCCACGGTGAAGATGCCG 6424 || || || ||| ||||| |||| ||| ||||| ||||||||||| |||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6425 GGCGGCAGGCGGGGGTTAAAGTAGTCAAT-GGGCGT--TTGTGAGTCGTCCAGGGCGCGC 6481 ||| ||||||| | || |||||||| || || | ||| | ||| || || || Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAA---GTCTAGCGCCTGC 180 Query 6482 TGCCAGTTCCGGGCGGCCAGCGCCCGCTCGTAGGGGTTGAGCGGCGGCCCCCAGGGCATG 6541 ||||| |||||||| ||||| |||||||| |||||||| || || ||||| |||||| Sbjct 181 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATG 240 Query 6542 GGGTGGGTGAGGGCCGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCG 6601 ||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| | Sbjct 241 GGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTG 299 Query 6602 AGGACGCCGATGTAGGTGGGGTAGCAGCGGCCGCCGCGGATGCTGGCGCGCACGTAGTCG 6661 || | || | || || |||||||| | || ||||||||||||||||||||||| ||| Sbjct 300 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCG 359 Query 6662 TACATCTCGTGCGAGGGGGCCAGCAGGTCGGGCCCCAGGTGGGTGCGGGCGGGGCGCTCG 6721 || | ||||||||||| || || |||||||| || |||| | | |||||||| |||| Sbjct 360 TATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCT 419 Query 6722 GCGCGGTAGAGGATCTGGCGAAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGGCGCTGG 6781 || ||| || ||||| | |||||||| || |||||||| || ||||| || |||||| Sbjct 420 GCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGG 478 Query 6782 AAGACGTTGAAGGCGGCG 6799 |||||||||||| |||| Sbjct 479 AAGACGTTGAAGCTGGCG 496 >seq213072 Length=511 Score = 399 bits (442), Expect = 5e-107 Identities = 297/342 (87%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5960 TCGGCGCTCAGGGTGTCAGTTTCCACGAACGAGGAGGATTTGATGTTGACCTGCCCGGCG 6019 || ||||| || |||||||||||| ||||||||||||||||| || ||||| || ||| Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6020 GCGATGCCTTTGAGGAGGGCGGGGTCCATCTGGTCGGCAAAGACAATCTTTTTGTTGTCG 6079 | ||||||||||||| ||| | ||||||||||| | |||| |||||||||||| ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6080 AGCTTGGTGGCGAAGGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGGAGCGCAGG 6139 ||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6140 GTCTGGTTCTTGTCGCGGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6199 || ||||| ||| |||| ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6200 CGCGCCAGGCAGCGCCATCGAGGAAAGACGGTGGTGCGCTCGTCGGGCAGGAGGCGCACG 6259 ||||| | ||| |||||| |||| ||||||||||||||||||||||| ||| ||||| Sbjct 411 CGCGCAACGCACCGCCATTCGGGAA-GACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6260 CGCCAGCCGCGGTTGTGCAGGGTGACCAGGTCGACGCTGGTG 6301 ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 165 bits (182), Expect = 2e-36 Identities = 188/250 (75%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 10746 CCTGGCCCGCCTGGGCGCGCACGCGCCGGAGCGGCACCCGCGGGTGCAGCTGGCTCGCGA 10805 |||||| || || || |||| | | || ||||||||||| ||||||||||| || || Sbjct 344 CCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGCGTGA 285 Query 10806 CAGCCGCGCGGCGTACGTGCCGCGGCAGAACCTGTTTCGGGAC-GCAAGCGGCGAGGAGG 10864 | || | |||||||||||||||||||||||||||||| ||| || || || |||||| Sbjct 284 TACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCGAG-GGAGAGGAGC 226 Query 10865 GGGAGGAGCTGCGCGACTGCCGCTTCCGGGCGGGGCGCGAGCTGCGCGCGGGGCTGGACC 10924 |||||| |||| || | |||| || |||||||||||||| || ||| | | Sbjct 225 CCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATC 166 Query 10925 GCGAGCGGCTGCTGCGGGCCGAGGACTTTGAGGCGGAGGAGGGGCGCGGGGTGAGCCCGG 10984 |||||||| ||||||| | |||||||||||| | || | | | |||| | || || | Sbjct 165 GCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCG 106 Query 10985 CGCGCGCGCA 10994 ||||||| || Sbjct 105 CGCGCGCACA 96 >seq295602 Length=499 Score = 132 bits (146), Expect = 1e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 14623 GACGGCAAGGAGCGCAGTTACAACCTGCTGCCCGACGACAAAAACAACACGGCCTACCGC 14682 ||| ||||| | |||||||||||||| | | | |||| | | ||| |||||| Sbjct 317 GACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCACCTTCACCCAGTACCGC 376 Query 14683 AGCTGGTACCTGGCCTACAACTACGGCGACCCCCTCAAGGGCGTGCGCTCGTGGACGCTG 14742 ||||||||||| || ||||||||||||||||| | | || | ||||| ||||| ||| Sbjct 377 AGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGGACCCTG 436 Query 14743 CTGACCACGCCCGACGTGACCTGCGGCTCCGAGCAGGTGTACTGGTCGCTGCC 14795 || ||| || ||||| ||||||||||| |||||||| ||||||||| |||| Sbjct 437 CTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCC 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112899234423814