Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5353 154 1e-31 >seq5353 Length=2895058 Score = 154 bits (170), Expect = 1e-31 Identities = 398/598 (67%), Gaps = 15/598 (3%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || ||||| || ||||| || ||||| ||||| | || |||| ||||| Sbjct 2261972 ATAGGCATTGATTTGGGCACCACCTACTCCTGTGTGGGTGTATTCCAGCATGGCAAAGTG 2261913 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||| || ||||| || || ||| | || || || ||||| |||||| || Sbjct 2261912 GAGATTATCGCAAATGACCAGGGAAACCGCACCACACCGAGCTATGTGGCTTTCAACGAT 2261853 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 | || | |||| ||||| || ||| | || | ||| || || ||| |||| Sbjct 2261852 TCAGAGAGGCTCATTGGAGATGCTGCGAAAAACCAGGTGGCCA-TG--AACCCTTCCAAC 2261796 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || || |||||||| |||| ||| |||| | ||| ||||| Sbjct 2261795 ACAATCTTCGATGCCAAGCGCTTAATTGGTAGAAAGTTTGATGACCAAATTGTGCAGGCT 2261736 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||||| ||||||||| | | | | | | ||||| || | | ||| Sbjct 2261735 GACATGAAGCTGTGGCCTTTCAAGGTCATCAGCGATAACGGAAAGCCCAAAGTCCAAGTG 2261676 Query 550292 -ACT-CATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | || | ||| | || |||| | |||||| | || || ||||||||| | Sbjct 2261675 GAGTACAAGGGGGA---GACCAAGGATTTCTTCCCAGAAGAGATCTCCTCTATGGTTCTG 2261619 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 | |||||||| | | ||| || | | || ||| || | ||||||| || Sbjct 2261618 GTCAAAATGAAGGAGATAGCTGAGGCCTACTTGGGGCAACGGGTGTCTAATGCAGTCATC 2261559 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || ||||||||||| || | |||||||| || ||||| || |||| Sbjct 2261558 ACCGTCCCAGCTTACTTTAATGACTCCCAGAGGCAAGCTACCAAGGATGCCGGGGTTATT 2261499 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | || || ||||| || || || |||||||| || || || || || | || ||||| Sbjct 2261498 TCAGGCCTGAATGTGCTACGGATCATCAATGAGCCGACAGCAGCGGCTATCGCCTATGGT 2261439 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAGGTA 550583 ||||| ||| || | |||| ||||| || |||||||| ||||||||| Sbjct 2261438 CTTGACAAAGCCAAAAAAGAAGAGAGAAATGTCCTAATCTTTGACCTGGGTGGAGGTA 2261381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4006691732544230