Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_016895.2 Length=31806 Score E Sequences producing significant alignments: (Bits) Value seq213072 221 2e-53 seq272266 158 2e-34 seq256110 114 3e-21 seq295602 82.4 2e-11 >seq213072 Length=511 Score = 221 bits (244), Expect = 2e-53 Identities = 258/343 (75%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 5585 TTCTGCGCACAGGTTGTCTGTTTCTATGTAAGAAGAAGATTTGACCACGAACGCGCCCGT 5644 |||||||| || ||||| ||||| | | || || ||||||| | | ||||| Sbjct 173 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGC 232 Query 5645 GGAGATGTCGTGGGCGGTCTCGGCATCTATTTGGTCAGAAAACACCGTCTTTTTGTTGTC 5704 || |||| | | | ||| | ||||| || ||||||||||| | ||||||||| ||| Sbjct 233 GGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTC 290 Query 5705 AAGCTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGCAGCTTGGCTATGCTGCGCAT 5764 |||||||||||| || || ||||||||||||||||| |||| |||||| ||| ||||| Sbjct 291 AAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAG 350 Query 5765 GGTTTGGTTTTTATTTTTGTCTGCCTGCTCTTTGGCCTGGATGTTTAGCTGCACGTACTC 5824 |||||||||||| || || |||| |||||| |||||||||||||||||| || Sbjct 351 GGTTTGGTTTTT-GCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 409 Query 5825 GCGCGCGAGACACTTCCACTCGGGGAAGACGGTGGCGCGGGCGTCGGGCACAAAGCGCAC 5884 |||||| | ||| ||| || ||||||||||||| ||| |||||||||| | | |||| Sbjct 410 GCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCAC 468 Query 5885 CTTCCAGCCTCTGTTGTGTAGGGTGATGACGTCAATGGAGGTG 5927 ||| || | |||||| ||||||| | ||||| | |||| Sbjct 469 GCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq272266 Length=497 Score = 158 bits (174), Expect = 2e-34 Identities = 333/492 (68%), Gaps = 11/492 (2%) Strand=Plus/Plus Query 5931 ACCTCCCCGCGGAGGGGCTCGTTGGTCCAGCACAGTCTTCCTCCCTTCCGCGAGCAGAAg 5990 ||||| ||||| ||| |||||||||||||||| || | || ||||| ||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 5991 ggggggAGGACATCTAAAAACTCATCTGCCGGGGGGTCTGCATCTATGGTGAGGATGGCG 6050 || || ||| |||| | || ||||||||||||| || | ||| | || || Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6051 GGCAGGAGCTCGGGGTCAAAGTAGCTGATCTGTGCCTCCGTTTGCATCTTCAACTCGTAC 6110 ||||| || | ||| |||||| |||| ||| ||| ||||| | | | | | | Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCT-TGCATCC--TTGCAAGTCTAGCGCCTGC 180 Query 6111 CGCC------GCACCGCCAGGGCTCTTTCAAAGGGATTGAGGGGCGGGCCCGCGGGGAAG 6164 ||| | | || || || | || | || ||||| || || ||| || | | Sbjct 181 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATG 240 Query 6165 GGATGCGTGAGCGCACTGGCATACATGCCGCAGATGTCATAGACAAACACGGGCTCGTCC 6224 || || |||||||| ||| ||||||||||| ||||| || || | |||||| Sbjct 241 GGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTG-AGGGGCTCTCTG 299 Query 6225 AGCAGTCCGATAAAGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACATACTCA 6284 || | ||| | | | || || || || | || |||||||||||||||||||| || || Sbjct 300 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCG 359 Query 6285 TACATCTCATTGGAAGGGGCCAACAGTGTGGTGCCCAGGTGGCTTTGGTTGGGCTTTTCG 6344 || | || | || || || | || || || |||| ||| || ||||| || Sbjct 360 TATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCT 419 Query 6345 GCCCTAAAGAGGATCTGCTTAAAGAGGGCGTGTGAGTTGGAGCTAATGGTAGGCCGCTGA 6404 || | ||| |||||| | |||| ||| ||||||||||| ||||| || ||||| Sbjct 420 GCTCGGAAGCT-ATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGG 478 Query 6405 AATACATTGAAG 6416 || || |||||| Sbjct 479 AAGACGTTGAAG 490 >seq256110 Length=496 Score = 114 bits (126), Expect = 3e-21 Identities = 242/354 (68%), Gaps = 9/354 (3%) Strand=Plus/Minus Query 9873 GCGAGGGCCTGGCCCGCATTCAAGGCGGGGCTGCGCCCGAGCAGCACCCGCGGGTGCGCC 9932 ||||||||||||| || | ||| | | | | || |||| |||||| |||||| | Sbjct 351 GCGAGGGCCTGGCGCGGCT---AGGAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGCAGC 295 Query 9933 TGAAGCAGGAGGCGGCCGAGGCTTACATcccccc-cAGTAACGTGTTCAGGGACAATGAA 9991 |||||| || || ||||| ||| | || | ||| ||| |||| | ||| || Sbjct 294 TGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAG-AACCTGTTTCGCGACCGCGAG 236 Query 9992 GGCGAAGAGGCCGAGGGCGTGCGGCACCTCAAATTTGAAGCGGGGCGGCTGCTGAAGCCG 10051 || || ||| |||||| ||||| | | || || | || ||||| |||| || Sbjct 235 GGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCAT 176 Query 10052 GGCCACGGGTCGGG-GCGGGTGCTGGGCGAGAAGGACTTTGAGAAGGACCCCAGGCACGG 10110 |||| | ||| | |||| ||||| ||||| ||||||||||| ||| | | ||| Sbjct 175 GGCCT-GAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGG 117 Query 10111 GGTGAGCCCCGCGGAGGCGCACCTCCGCTCGGCGGACCTGGTGACCGCGTACGAGCAGAC 10170 | | || |||||| || ||| | | || |||||||| ||||| ||||||||||| Sbjct 116 GATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGAC 57 Query 10171 AGTGAAGGAGGAAGTGAACTTCCAGACCTCTTTTAACAACAACGTGCGCACGCT 10224 ||||| |||| | |||||| | | ||||||||| ||||||| ||||| Sbjct 56 GGTGAACCAGGAGATTAACTTCAAAA--AGCTTTAACAACCACGTGCGTACGCT 5 >seq295602 Length=499 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 13560 CACCTTCACCTGGTACCGCAGCTGGTACCTGGCCTACAACTACGGGGACCCCCAG---GG 13616 |||||||||| |||||||||||||||||| || ||||||||||| ||||| ||| || Sbjct 358 CACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGG 417 Query 13617 GGTGCGCAGCCAGACCCTGTTGGTCTCCCCGGACATCACCTGCGGAGTGGAGCAGATTTA 13676 | ||| ||||||| | | | || ||| | |||||||| ||||||| | || Sbjct 418 AATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTA 477 Query 13677 CTGG 13680 |||| Sbjct 478 CTGG 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101141616964432