Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_017825.1 Length=36711 Score E Sequences producing significant alignments: (Bits) Value seq272266 374 2e-99 seq213072 318 1e-82 seq256110 288 2e-73 seq295602 118 2e-22 >seq272266 Length=497 Score = 374 bits (414), Expect = 2e-99 Identities = 386/500 (77%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6351 ACCTCGCCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAG 6410 ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6411 GGGGGCAGAGGGTCCAGCATGACCTCGTCgggggggTCGGCATCGATGGTGAAGATGCCG 6470 || || || ||||| ||| |||||| |||||||| || || | ||| |||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6471 GGCAGGAGATCGGGGTCGAAGTAGCTGATG--GAAG--TGGCCAGATCGTCCAGGGAAGC 6526 ||||| || | |||||||||| || | | | || || || || | Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAG----TCTAGCGCCTG 179 Query 6527 TTGCCATTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTGAGGGGCGTGCCCCAGGGCAT 6586 |||||| |||| |||| |||||||||||||| || |||| || | ||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6587 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTC 6646 ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6647 GAGGATGCCGATGTAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTC 6706 ||| || || | || || |||||||| | || ||||||||||||||||||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6707 ATACAGCTCGTGCGAGGGCGCGAGGAGCCCCGGGCCCAGGTTGGTGCGACTGGGCTTTTC 6766 || || ||||||||||| |||||||| | || || |||||| | || ||||| || Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6767 GGCGCGGTAGACGATCTGGCGAAAGATGGCATGCGAGTTGGAGGAGATGGTGGGCCTTTG 6826 || ||| || | ||||| | ||||||||||| |||||||| || ||||| || | || Sbjct 419 TGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6827 GAAGATGTTGAAGTGGGCGT 6846 ||||| ||||||| ||||| Sbjct 478 GAAGACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 318 bits (352), Expect = 1e-82 Identities = 279/342 (82%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 6006 TCGGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATATTGACGGTGCCAGCG 6065 || || || || ||||||||||| | ||||||||||||||||||||| || ||| ||| Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6066 GAGATGCCTTTCAAGAGCCCCTCGTCCATCTGGTCAGAAAAGACGAtttttttGTTGTCG 6125 | ||||||||| | | || | |||||||||||||||||| | || ||||||| ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6126 AGCTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAAAGGAGCTTGGCGATGGAGCGCATG 6185 ||||||||||| || || ||||||||||||||||| || | ||||||||||||||||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6186 GTCTGGtttttttCCTTGTCGGCGCGCTCCTTGGCCGCGATGTTGAGCTGCACGTACTCG 6245 || ||| ||||| | |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 352 GTTTGG-TTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6246 CGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTCATCTCGTCGGGCACGATTCTGACC 6305 ||||| |||||| |||||| |||||||||||||| |||||||||||| | || Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6306 TGCCAACCTCGATTATGCAGGGTGATGAGGTCCACACTGGTG 6347 ||||||| || || |||||||||| ||||| || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 288 bits (318), Expect = 2e-73 Identities = 290/372 (78%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 10992 CACCTGGCCTTGGAAGAGGGCGAGGGGCTGGCGCGCCTGGGGGCGTCGTCGCCGGAGCGG 11051 ||||||| |||||| ||||||||||| |||||||| || || ||| | || || |||||| Sbjct 370 CACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGG 311 Query 11052 CACCCGCGCGTGCAGATGAAAAGGGACGCTCGCGAGGCCTACGTGCCCAAGCAGAACCTG 11111 ||||| | |||||| |||| | || | || ||||| |||||||| |||||||||| Sbjct 310 CACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTG 251 Query 11112 TTCAGAGACAG-GAGCGGCGAGGAGCCCGAGGAGATGCGCGCGGCCCG---GTTCCACGC 11167 || | ||| | ||| || |||||||||||||||||||| || || ||||||||| Sbjct 250 TTTCGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCG---GGATCGAAAGTTCCACGC 195 Query 11168 GGGGCGGGAGCTGCGGCGCGGCCTGGACCGAAAGAGGGTGCTGAGGGACGAGGATTTCGA 11227 ||||| |||||||||| |||||| | || || || ||||| | || ||||| || || Sbjct 194 AGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGA 135 Query 11228 GGCGGACGAGCTGACGGGGATCAGCCCCGCGCGCGCGCACGTGGCCGCGGCCAACCTGGT 11287 | | |||| || || ||||| || ||||||||||| |||||||| || ||| ||||||| Sbjct 134 GCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGT 75 Query 11288 CACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAACCA 11347 || || ||||||||||| ||||| |||||| |||||| |||| ||| |||||||| Sbjct 74 AACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCA 17 Query 11348 CGTGCGCACCCT 11359 |||||| || || Sbjct 16 CGTGCGTACGCT 5 >seq295602 Length=499 Score = 118 bits (130), Expect = 2e-22 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 14980 TACCGCAGCTGGTACCTGGCCTACAACTATGGCGACCCCGAGAAGGGCGTGCGCTCCTGG 15039 ||||||||||||||||| || |||||||| |||||||| ||| || | ||||| ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 15040 ACGCTGCTCACCACCTCGGACGTCACCTGCGGCGTGGAGCAAGTCTACTGGTCGCTGCCC 15099 || ||||| ||| | ||||| ||||||||| |||||| |||||||||||| |||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 15100 GACATGATGC 15109 | |||||||| Sbjct 491 G-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116757948845902