Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4474 174 1e-38 seq198807 170 2e-37 seq5983 170 2e-37 >seq4474 Length=502254 Score = 174 bits (192), Expect = 1e-38 Identities = 373/552 (68%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 111793 CTCTCGTAGACTTTAAACTCGTACCATATCCCGTTCTCCTCCTGAGTCTCAACGGGAACG 111852 |||| ||| || | ||| |||| || |||||||||||||| ||| | || Sbjct 9417 CTCTGGTACACCTGGAACCGGTACTGGATGCCGTTCTCCTCCTGCAGCTCCGACGACACC 9358 Query 111853 CCTGGAAACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCG 111912 || ||| |||||||||| || || | | | || | | |||| || ||||| Sbjct 9357 CCAGGATACTCTGGCAGCAGCCGGAACTGGGCCGGGCTGATGTCAGGGAAGAACGTGTCA 9298 Query 111913 CACGCAAATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATG 111972 | || || ||| | | | ||||| |||| |||| | | |||| ||||||| Sbjct 9297 CTCGGGAACTGCTTTAGGATCCGCGTGACGAACAACCTCCGGGGGCACGGGGTCTCCATC 9238 Query 111973 AGCTCCCCGTAGAGAGAGCTACCTCCAATCACCCAGATCTGGTCGGCTACGTCGGCGAGA 112032 | |||| ||| | |||||| || ||||||| ||| | |||||| || | | | | Sbjct 9237 ACCTCCGAGTACATAGAGCTGCCGCCAATCAACCACACCTGGTCTGCCA-GCAGACCCTC 9179 Query 112033 GTTGTCGTCGCT-AGCTCTACGGTGGAGCTAAAGTCGGACGCCAGGTGATGAGCTCCAGA 112091 | |||| || | || ||| | ||| |||||||| ||||||||||| Sbjct 9178 CGGGCCGTCCAGGAGGCGGAGGGCAGAGGGCAGGTCCCGGGCCAGGTGGTGAGCTCCAGA 9119 Query 112092 CGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATT 112151 ||| || | | |||| || || || || | |||||| ||||| | || |||| || Sbjct 9118 CGGCGGGGCCTCCAGCTGCCGACTCAGAACGATGTTTATTCTGTCGTTAAGCGGTCGGTT 9059 Query 112152 CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTG-CCTC 112210 ||| || ||||||||| ||||||||||| ||||| || ||||||||||||||| |||| Sbjct 9058 CTTCTCCGGGATGGAGTTCCAAGTCTTTCGGCCCATGATGACCACGTTCTGCTTGTCCTC 8999 Query 112211 TG--ACTGAAG---ACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCT 112265 | | | || ||| | ||||| || || ||||| || || ||| ||||| Sbjct 8998 CGCACCAGGAGTCCTCGTTACCGTCAACCGGCGGAAATGTTTGAACTCGTTGTTGAGTCT 8939 Query 112266 CGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCAC 112325 | || |||||||| |||||||| || | ||||||||| ||| |||||||||||||| Sbjct 8938 AGTGGGGTGCCACGGGAGATCTCCTTTATAGCCGATGCCCCCGTCCGGACACACGGCCAC 8879 Query 112326 GATACCGTTCAG 112337 ||||| ||| || Sbjct 8878 GATACAGTTTAG 8867 >seq198807 Length=933 Score = 170 bits (188), Expect = 2e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||||||||| || | ||| || ||||| || || ||||| |||||||| Sbjct 743 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 802 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| ||||| |||| || |||||||||||| || |||||| | ||||||| Sbjct 803 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 856 >seq5983 Length=3405033 Score = 170 bits (188), Expect = 2e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||||||||| || | ||| || ||||| || || ||||| |||||||| Sbjct 1577616 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 1577557 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| ||||| |||| || |||||||||||| || |||||| | ||||||| Sbjct 1577556 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 1577503 Score = 165 bits (182), Expect = 7e-36 Identities = 141/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 30143 CTGCNNNCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 |||| |||||| ||||| || ||||| || |||||||||||||| |||||||| || | Sbjct 1576459 CTGCGTGCATGTCTGTGTATTCGGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGC 1576400 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 ||||||| ||||| |||| | || |||||| | || |||| || || | |||||||| Sbjct 1576399 CCAGGTCGCCCTCCTCCCGCTCCTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGT 1576340 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||||||||| || |||||||| || ||||| ||||| || ||||| || Sbjct 1576339 TGGCGTCCCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGAATTCGTGGAACC 1576285 Score = 111 bits (122), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 || |||||||||||||||||| ||||||||| | ||| || |||||| | || ||| || Sbjct 1577112 CTCTGGGGTTCCAGGCGCACATGATGATGCGGCGGTCCTCCGGGTTGCTTCTTATGGTGT 1577053 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 ||||| | || |||||||| ||||| ||| | |||||||||||||| Sbjct 1577052 CCACGACCTTCTGCAGCTGGTCCACGCCCTTACCCGAGTAGTCTGC 1577007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406489001999471