Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5389 347 2e-90 seq3661 129 1e-24 seq300154 118 2e-21 seq300152 118 2e-21 seq3564 96.9 6e-15 >seq5389 Length=131951 Score = 347 bits (384), Expect = 2e-90 Identities = 813/1218 (67%), Gaps = 34/1218 (3%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||| || ||||||||||||||||| ||||| | ||||||| || |||||| || Sbjct 37749 CAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCT 37690 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||| |||| || ||| |||||||||| ||||| || ||||| ||||| Sbjct 37689 CTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGAT 37630 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 |||| ||| | | |||| || | | || ||||| || || |||||||| ||||| Sbjct 37629 AGGCCGGTGCCGCTTGTTCGACCTCTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGAT 37570 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | |||||||||||| ||| || || || || |||||||| | | ||| Sbjct 37569 GATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAA 37510 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 |||| |||||| | | || ||| || || | | |||||| Sbjct 37509 GGTGCGCTCG--GCCGTCACGTA---------CAT----GTTGAGCGCGATGGAGGCCAG 37465 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| |||||||| ||||||||| | |||| |||| |||||||| || || |||||||| Sbjct 37464 GTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCT 37405 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 | |||||||| ||||||| | || || |||||| ||| |||||||||||||| Sbjct 37404 GGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAG 37345 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| |||| ||| |||||| ||| | | | | || || ||| | | ||| | Sbjct 37344 CATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACCTG-CTGTG 37286 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 | ||||| | |||| | ||| | | || | || ||||| || ||| | |||| Sbjct 37285 CCTTCACCACGCGCTTGGCCTTGCCCGCCGCCT---CGTAGCCGGTGTACAGCTTCTCAA 37229 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | ||||||||| || || || | ||| |||||||| ||| | Sbjct 37228 ACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATT 37169 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 || |||| | ||||||| |||||| ||||| |||||||||| | | || || | Sbjct 37168 CCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGT 37109 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | || |||||||||||| ||| |||| ||| |||| |||| ||||| || | || Sbjct 37108 CGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGACGT 37049 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | |||||||| |||||||| || | ||| | || ||||| ||||||||||| ||||| | Sbjct 37048 CGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGT 36989 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 |||| | | || |||| | | ||| || | || ||||| |||||||| | Sbjct 36988 CCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGC 36929 Query 222258 CGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATA 222316 |||||||||| ||||| | | ||| ||| | | | || | | || |||||| Sbjct 36928 CGTTGGTGCCGGCGATGTAGCTCCCCG-TGGCGCGGATGCAGCTCACCGCCACGCCGATG 36870 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 || || || || ||||| | ||||| |||||| ||||| ||||||||| || Sbjct 36869 CCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATG 36810 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 ||| ||||| | | |||||| || || | ||| | | | ||| | |||| Sbjct 36809 CTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGCCGGCG 36750 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || ||||||||||| |||||| || || | | |||| ||| | ||||||||| Sbjct 36749 TTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCC 36690 Query 222497 ACGACTCTGGCGATGTTGTCCC---CGTGAATCTGCATGGCGCATCTCATGTACATGTAC 222553 ||| | |||| | |||||| ||| || || || ||||| ||||| | Sbjct 36689 ACGGC---GGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGTGC 36633 Query 222554 TGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACGATTTTTCCAGAGTC 222610 || |||| |||| | ||||| | || ||||||||||| ||||| ||| Sbjct 36632 TGCGGCCGCTCC---GCCACCTTGCCGTTGATCTTCAGCAGGTACGAGCGCTCCAGCGTC 36576 Query 222611 TTGAACCCAAAGTAGTTG 222628 ||||| || ||| ||||| Sbjct 36575 TTGAAGCCGAAGAAGTTG 36558 Score = 141 bits (156), Expect = 2e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||||||| || |||| | |||||| ||| | | Sbjct 38094 CATCTCCTCGCTCCACAGCCCCCTCTCCGTGAGGTCCTTCAGCATGTGGGGGTTGATGAT 38035 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||||||||||||||| | ||||||||| ||| | || |||||| Sbjct 38034 CTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGATGGA 37975 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||| || Sbjct 37974 CTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCT 37915 Query 221245 GTT 221247 ||| Sbjct 37914 GTT 37912 >seq3661 Length=2364936 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || ||||||||||| || ||||||||| || |||||||| Sbjct 460738 GGTGAGCGAGTGGTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCC 460679 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| |||| |||||||| ||| ||| ||||| || ||| Sbjct 460678 TCCATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGAACTC 460619 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||||||||||| Sbjct 460618 ATCAGCAGGGACGAGG 460603 >seq300154 Length=373 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || ||||||||||| || ||||| ||| || ||||| || Sbjct 80 GGTGAGCGAGTGGTTGCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCC 139 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 ||||||||||||| ||| ||| |||| |||||||| ||| ||||| ||||| ||||| Sbjct 140 TCCATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTG-ACTTTCTCCAATGAGCT 198 Query 25992 CATCAGCAGGGACGAGG 26008 |||||||||||| |||| Sbjct 199 CATCAGCAGGGATGAGG 215 >seq300152 Length=362 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || ||||||||||| || ||||| ||| || ||||| || Sbjct 80 GGTGAGCGAGTGGTTGCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCC 139 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 ||||||||||||| ||| ||| |||| |||||||| ||| ||||| ||||| ||||| Sbjct 140 TCCATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTG-ACTTTCTCCAATGAGCT 198 Query 25992 CATCAGCAGGGACGAGG 26008 |||||||||||| |||| Sbjct 199 CATCAGCAGGGATGAGG 215 >seq3564 Length=3914096 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||||||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 3070171 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 3070112 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| |||||||||||||| || | || Sbjct 3070111 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCG 3070052 Query 221850 CGCCAGTCTCC 221860 ||| |||||| Sbjct 3070051 TGCCCGTCTCC 3070041 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||||||| | ||||||||||||||||||| ||||||| || ||||||||| Sbjct 3071013 CAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATGTTGAGCAGCTGGGCCTCGGGGCT 3070954 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||| | |||| | ||| |||||||||| ||||| || ||||| ||||| Sbjct 3070953 TTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATGCCGAT 3070894 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 |||||||| | | ||||||| Sbjct 3070893 AGGCCTGTGGCGCTTGTTGGA 3070873 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||||||||| || || ||||||| | | || || ||||||| |||||||||||| Sbjct 3069622 CTCCATGAAGAGATCTGGTATCCACATGCCGTAGAACAGGTCTCTGGCCCGCTGCTCCTC 3069563 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||| |||| ||| |||| |||| |||||||| | || || ||||| ||||| || Sbjct 3069562 CTTACCGGTGTTCTTCTTCAGCTCCAGGAACTCAAACACATCTGCATGCCAGGGCTCTAG 3069503 Query 222157 ATAGACGGC 222165 ||| | ||| Sbjct 3069502 ATACATGGC 3069494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || || || ||||| | ||| | ||| ||| | || || ||| Sbjct 3071845 ACCTGGAACTCCCCAGACAGAACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATG 3071786 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||| ||||||||||| || ||| ||||||||||||||| |||| ||||||| Sbjct 3071785 GACTCGTTGTTACCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGAGCCAGCAGCAGA 3071726 Query 221243 CTGTT 221247 ||||| Sbjct 3071725 CTGTT 3071721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923882133170880