Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq300558 729 0.0 >seq300558 Length=1001 Score = 729 bits (808), Expect = 0.0 Identities = 421/432 (97%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 28534 TCAATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAAC 28593 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 432 TCGATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAAC 373 Query 28594 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 28653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 313 Query 28654 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 28713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 253 Query 28714 GCTACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 28773 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GCCACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 193 Query 28774 TCTTCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGT 28833 ||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| Sbjct 192 TCTTCCATCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGT 133 Query 28834 TTCAAGGCTTCTTGGGCGCCGCTGGCGTGCGTTCCACTCCTGAAGTGTTAAGTACATCGC 28893 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 132 TTCAAGGCTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGC 73 Query 28894 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 28953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 13 Query 28954 TTCTTCAAATCG 28965 |||||||| ||| Sbjct 12 TTCTTCAATTCG 1 Score = 181 bits (200), Expect = 3e-41 Identities = 100/100 (100%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24226 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 24285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 563 Query 24286 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 24325 |||||||||||||||||||||||||||||||||||||||| Sbjct 564 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 603 Score = 179 bits (198), Expect = 1e-40 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 21039 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 21098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 942 Query 21099 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 21137 ||||||||||||||||||||||||||||||||||||||| Sbjct 941 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 903 Score = 178 bits (196), Expect = 4e-40 Identities = 125/138 (91%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 16837 GACCGTGAAATCACGCTGCC--ATCCTC-CGGTACCGCGCTGATAAGCCTGGTTGACGGA 16893 |||||||||| | | ||| || || ||||||||||||||||||||||||||||||| Sbjct 832 GACCGTGAAAACGGCCCGCCGCATTCTGGCGGTACCGCGCTGATAAGCCTGGTTGACGGA 773 Query 16894 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 16953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 713 Query 16954 AGCCGTGTTCCT-GACGG 16970 |||||| ||| | ||||| Sbjct 712 AGCCGT-TTCGTCGACGG 696 Score = 176 bits (194), Expect = 1e-39 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5315 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTGCTGGCAGAAA 5374 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTACTGGCAGAAA 843 Query 5375 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 5414 |||||||||||||||||||||||||||||||||||||||| Sbjct 842 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 803 Score = 154 bits (170), Expect = 4e-33 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33256 TCGATGGCCTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAGTC 33315 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAGTC 643 Query 33316 TGGATAGCCATAAGTGTTTTATCCATTTTTGGGAACTCCT 33355 ||||||||||||||||||| ||||||| || || |||||| Sbjct 642 TGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150432554821500