Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq300558 774 0.0 seq266300 120 9e-23 >seq300558 Length=1001 Score = 774 bits (858), Expect = 0.0 Identities = 431/432 (99%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 28534 TCAATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAAC 28593 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 TCGATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAAC 373 Query 28594 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 28653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 313 Query 28654 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 28713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 253 Query 28714 GCCACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 28773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GCCACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 193 Query 28774 TCTTCCATCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGT 28833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 TCTTCCATCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGT 133 Query 28834 TTCAAGGCTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGC 28893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TTCAAGGCTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGC 73 Query 28894 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 28953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 13 Query 28954 TTCTTCAATTCG 28965 |||||||||||| Sbjct 12 TTCTTCAATTCG 1 Score = 185 bits (204), Expect = 3e-42 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 33055 CGTCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 33114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 CGTCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 645 Query 33115 TCTGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 33156 |||||||||||||||||||||||||||||||||||||||||| Sbjct 644 TCTGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 603 Score = 181 bits (200), Expect = 3e-41 Identities = 100/100 (100%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24226 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 24285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 563 Query 24286 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 24325 |||||||||||||||||||||||||||||||||||||||| Sbjct 564 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 603 Score = 179 bits (198), Expect = 1e-40 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 21039 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 21098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 942 Query 21099 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 21137 ||||||||||||||||||||||||||||||||||||||| Sbjct 941 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 903 Score = 178 bits (196), Expect = 4e-40 Identities = 125/138 (91%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 16837 GACCGTGAAATCACGCTGCC--ATCCTC-CGGTACCGCGCTGATAAGCCTGGTTGACGGA 16893 |||||||||| | | ||| || || ||||||||||||||||||||||||||||||| Sbjct 832 GACCGTGAAAACGGCCCGCCGCATTCTGGCGGTACCGCGCTGATAAGCCTGGTTGACGGA 773 Query 16894 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 16953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 713 Query 16954 AGCCGTGTTCCT-GACGG 16970 |||||| ||| | ||||| Sbjct 712 AGCCGT-TTCGTCGACGG 696 Score = 176 bits (194), Expect = 1e-39 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5315 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTGCTGGCAGAAA 5374 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTACTGGCAGAAA 843 Query 5375 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 5414 |||||||||||||||||||||||||||||||||||||||| Sbjct 842 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 803 >seq266300 Length=503 Score = 120 bits (132), Expect = 9e-23 Identities = 66/66 (100%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 28964 CGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAG 29023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 CGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAG 444 Query 29024 TCGTTG 29029 |||||| Sbjct 443 TCGTTG 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149802170782248