Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5353 165 5e-35 seq6072 89.7 3e-12 >seq5353 Length=2895058 Score = 165 bits (182), Expect = 5e-35 Identities = 404/606 (67%), Gaps = 15/606 (2%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| |||| || |||||||| || || || ||| ||||| | ||| | || ||| Sbjct 2261980 GAATATCAATAGGCATTGATTTGGGCACCACCTACTCCTGTGTGGGTGTATTCCAGCATG 2261921 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || || || |||||||| || || | || ||||| ||||| ||| Sbjct 2261920 GCAAAGTGGAGATTATCGCAAATGACCAGGGAAACCGCACCACACCGAGCTATGTGGCTT 2261861 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | | || | || || |||||||||||||| ||| | || | || || ||| Sbjct 2261860 TCAACGATTCAGAGAGGCTCATTGGAGATGCTGCGAAAAACCAGGTGGCCATGAACCCTT 2261801 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || || ||||| || | || |||||| | || |||||||| | ||| | Sbjct 2261800 CCAACACAATCTTCGATGCCAAGCGCTTAATTGGTAGAAAGTTTGATGACCAAATTGTGC 2261741 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | |||| ||| | |||||||| ||||| || | | | || || || | | Sbjct 2261740 AGGCTGACATGAAGCTGTGGCCTTTCAAGGTCATCAGCGATAACGGAAAGCCCAAAGTCC 2261681 Query 474624 AAGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 ||| | |||| | || || || || | || | || ||| | || || || ||||| Sbjct 2261680 AAGTGGAGTACAAG--GGGGAGACCAAGGATTTCTTCCCAGAAGAGATCTCCTCTATGGT 2261623 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | | ||||||||| | | || ||| | || | || ||| || || |||||| Sbjct 2261622 TCTGGTCAAAATGAAGGAGATAGCTGAGGCC-TACTTGGGGCAACGGGTGTCTAATGCAG 2261564 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || |||||||| || || | ||||| || || ||||| || Sbjct 2261563 TCATCACCGTCCCAGCTTACTTTAATGACTCCCAGAGGCAAGCTACCAAGGATGCCGGGG 2261504 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||| |||| || ||||| |||| || || ||||| || |||||||| || | || | Sbjct 2261503 TTATTTCAGGCCTGAATGTGCTACGGATCATCAATGAGCCGACAGCAGCGGCTATCGCCT 2261444 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAG---TAAATGTTTTAATCTTTGA---TTGTG 474914 ||||||||| | || | | ||||||| |||||| |||||||||| ||| Sbjct 2261443 ATGGTCTTG---ACAAAGCCAAAAAAGAAGAGAGAAATGTCCTAATCTTTGACCTGGGTG 2261387 Query 474915 GAGGTA 474920 |||||| Sbjct 2261386 GAGGTA 2261381 >seq6072 Length=1613416 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || || || ||||| ||||| ||||||||||| ||||| | Sbjct 409733 ATGCCGTCGTCACAGTACCCGCGTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGACG 409674 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||| | || || | || || |||||||| || || ||||| || Sbjct 409673 CCGGAACCATCTCTGGTTTAAACGTACTGCGAATCATTAATGAGCCCACTGCAGCTGCTA 409614 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| |||||||| || ||||| Sbjct 409613 TTGCATATGGTCTGGACAAGAA 409592 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||||| || || || || ||||| || || |||||||| || || |||| Sbjct 422735 ATGCAGTTGTTACTGTGCCTGCCTACTTCAATGACTCCCAGCGTCAAGCCACCAAGGATG 422794 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | || | || || |||||| | || || || || ||||||||||| || || Sbjct 422795 CTGGTACCATCTCTGGCCTCAATGTTCTCCGCATCATCAACGAACCAACAGCCGCAGCCA 422854 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| || || || || ||||| Sbjct 422855 TTGCCTACGGCCTGGACAAGAA 422876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3249844782094196