Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4243 104 3e-17 seq10156 98.7 1e-15 seq1337 98.7 1e-15 seq3866 95.1 1e-14 seq2750 82.4 9e-11 >seq4243 Length=3946 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 160139 CCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGG 160198 |||||| | ||| ||| ||| |||| ||| | || | | |||| | |||| ||| || Sbjct 1219 CCAGTGGAGGTCACCGACCCCAAACAGGCAAATAGATCTTCTGTGGATGCCGCGGCAGGG 1160 Query 160199 CGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGC 160258 | || |||| |||||| | ||| ||||| || | ||||||||||| | || Sbjct 1159 AGCATAGGGAGCCCCTTTCCGGATGTCCCCTTCCAAGGAACCCCACTTCACAAGGCGAGC 1100 Query 160259 TATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACC-GGGAACGC 160317 || | | |||||| || | || || |||| ||| || | | ||| ||| ||| Sbjct 1099 GATGGAATTCATGTCCGACGCATCATACTTGT-CATTGGGAGGCTGTGACCCGGGCACGG 1041 Query 160318 CGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACC 160377 ||||| || || || |||||||||||||||||||| |||||||| |||||||| || Sbjct 1040 ATGGCATTCGTTGAAGAGTGGCCCACAGGTGTTCGTCTGGGCTGTAGGTGTCCTTCTCCC 981 Query 160378 ATTCCA 160383 | |||| Sbjct 980 ACTCCA 975 >seq10156 Length=906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 218/324 (67%), Gaps = 20/324 (6%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 |||||||| || | ||| | | |||| | || ||| || ||||||||||| | || Sbjct 344 TCCAGACAGTGAATGGCTATCGGGTCAGCTGCTAGGTCAAACTTATTTGCGAAAAAGTGA 403 Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181 || |||| || | ||| |||| ||| ||| ||| ||||||| ||||| || | | Sbjct 404 TGCT-GTTCC--AGAAGCCACTGCAGGTCCCCGATGCCGTACACGCACACGGACCGAACG 460 Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGC 160241 || ||| | || ||||| | | ||| | |||| ||||| Sbjct 461 TGGTGTCCGCTACACATAGGGTAGACTG--------GCCCC-------TCGTGCCACTGC 505 Query 160242 CACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGG-GG 160300 ||||| || | | ||| | || | |||||||| |||||| ||| |||| || || Sbjct 506 CACTTGACCATTCGTGCTCTGGCATTCATGTCGGTCAAGTCGTACTTGG-CATCGGGCGG 564 Query 160301 AACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCT 160360 || ||||||||| |||||||| || || | ||||||||| ||| ||||||||||| Sbjct 565 TGAGGAACCGGGAACACCGGGCATGCGTTGGATGGTGGCCCAGAGGAACTCGTCGGGGCT 624 Query 160361 GTACGTGTCCTTAGACCATTCCAT 160384 ||||| |||||| | ||| || || Sbjct 625 GTACGAGTCCTTGGCCCACTCGAT 648 >seq1337 Length=858540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 160139 CCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGG 160198 |||||| | ||| ||| ||| |||| ||| | || | | |||| |||| ||| || Sbjct 7534 CCAGTGGAGGTCACCGACCCCAAACAGGCAAATAGATCTTCTGTGGGTGCCGCGGCAGGG 7593 Query 160199 CGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGC 160258 | || |||| |||||| | ||| ||||| ||| ||||||||| | | || Sbjct 7594 AGCATAGGGAGCCCCTTTCCGGATGTCCCCTTCCAGGTAACCCCACTTCACCAGGCGAGC 7653 Query 160259 TATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACC-GGGAACGC 160317 || | | |||||| || | || || |||| ||| || | | ||| ||| ||| Sbjct 7654 GATGGAATTCATGTCCGACGCATCATACTTGT-CATTGGGAGGCTGTGACCCGGGCACGG 7712 Query 160318 CGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACC 160377 ||||| || || ||||||||||||||||||||||| |||||||| |||||||| || Sbjct 7713 ATGGCATTCGTTGAAGGGTGGCCCACAGGTGTTCGTCTGGGCTGTAGGTGTCCTTCTCCC 7772 Query 160378 ATTCCA 160383 | |||| Sbjct 7773 ACTCCA 7778 >seq3866 Length=1471978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 215/322 (67%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 |||||||| | ||||||||||| | ||| |||||| | | || ||||| ||||| Sbjct 425260 TCCGTCTCCATGCTGTTGGCACCCTTCAGCATTTTCAGGCTCCTCACCATCTCCAGGTTG 425319 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG 160694 || || | || ||||| ||| |||| ||||| | ||||||||||| | ||| | Sbjct 425320 GTTTTCAAGGGGAAGTCCTGACCACACAGATTTATGAAATACTTCCATTTGGTGCTGACA 425379 Query 160695 TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754 | | ||||| |||||| || ||||| || ||||| | |||| || || || Sbjct 425380 TTGAAGAGGTCAGCCATGCAGTTGATATCCGCTTGCACTCTTGGCCAGCCGGCATAGACC 425439 Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC 160814 |||| | | || ||| ||| ||||||||| |||||| | ||| | || || Sbjct 425440 ACGTCCACGGGTCGGCTGACCATGAAGACGTTAGGGAAACAGAAAGTGATGCTCATGACA 425499 Query 160815 G---CCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 | |||| || || || ||||| |||||| || || || || ||||| ||| Sbjct 425500 GCTTCCAGGAACGCCAAGCTA---GCCTTCTTGTCCACATGGACACAGTAAAGGTTTTGA 425556 Query 160872 GGCGCGTAGATGGCCCTGAGCA 160893 || ||||| || || | |||| Sbjct 425557 GGTGCGTATATTGCTCGCAGCA 425578 >seq2750 Length=414638 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 ||||| | || || || | ||||| | | || ||||||||||| ||||| | || Sbjct 216526 CTGTTTTCCCCTTCCAGAGCCTTCAGGTCCCGCACCATCTCTAGGTTGGTCTTCATGGGG 216467 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 ||||| || || | ||| || | |||||||| | || ||| | || |||| ||| Sbjct 216466 AAGTCCTGCCCACAGAGGTTGATGAAATACTTCCACTCCGTGCTGACGTGCAGCAGATCC 216407 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 |||||| || | || |||||||| || ||||| ||||| || || ||| | || Sbjct 216406 GACATGCAGTTGAGGTCCGCCTGCACCCGCATCCAGCTGGCGTAGACCACTTTCACGGGT 216347 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGAT 160804 | |||| ||| || ||||| |||||| || |||| Sbjct 216346 TGACTGACCATGAACACGTTGGGGAAACAGGAAGCGAT 216309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574135211612520