Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_020485.1 Length=34302 Score E Sequences producing significant alignments: (Bits) Value seq272266 208 2e-49 seq213072 172 1e-38 seq256110 143 6e-30 seq295602 86.0 1e-12 >seq272266 Length=497 Score = 208 bits (230), Expect = 2e-49 Identities = 356/503 (71%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 6269 TACTTCACCGCGTAAGGGCTCGTTAGTCCAACACAGTCGTCCACCTTTGCGGGATCCAAA 6328 ||| || ||||||| | ||||||| ||||| || || || || || ||||| || | || Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6329 AGGAGGAAGAACATCTAAGTTGCGT-TCATCTGGAGGGTCGGCGTCAATTGTAAAAATAG 6387 || || || |||| | ||||| || || || ||||| ||||| | ||||| | Sbjct 63 TGGCGGTAGGGGGTCTA-GCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCC 121 Query 6388 CAGGCAAAAGTTGTTTGTTAAAATAATCAATTATCTGTAA--CTTATTACTA-AGGGCCA 6444 | |||| || | || || || || ||||| | ||| | | || ||| Sbjct 122 CGGGCAGCAGGCGCGCGTCGAAGTAGTC---TATCTTGCATCCTTGCAAGTCTAGCGCCT 178 Query 6445 ATTCCCAGTCGCGTACGGCCAAAGCTCGTTCATATGGACTTAAGGGGGCACCCCATGGCA 6504 | ||| |||| |||| | || || || ||||| | | |||| ||||||||||| Sbjct 179 GCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCA 238 Query 6505 TAGGATGGGTTAAAGCTGAAGCGTACATGCCGCAAATGTCATAAACATAAATGGGCTC-C 6563 | || ||||| | || || |||||||||||||||||||| ||||| | | |||||| | Sbjct 239 TGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTGAG-GGGCTCTC 297 Query 6564 TGAAGTACTCCAATGTAAGTTGGGTAACAGCGCCCTCCTCTGATGCTGGCGCGCACGTAG 6623 ||| ||| ||||| || || ||||| || | || || | |||||||||||||||||| Sbjct 298 TGA-GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAA 356 Query 6624 TCATAAAGCTCGTGTGAGGGAGCCAGTAGGTGGCGACTGAGGTGCGCT-CGTTGTGATTT 6682 || || || ||||| |||||||| || |||| | ||| ||||| ||| || | | Sbjct 357 TCGTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGT-TGCTACGGGCGGGCTG 415 Query 6683 TTCTGCTCGGTAAAGAATTTGTCTAAAGATGGCATGAGAGTTGGAAGAGATGGTAGGCCG 6742 ||||||||| || || || || ||||||||||| |||||||| || ||||| || || Sbjct 416 CTCTGCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACG 474 Query 6743 CTGGAAAATGTTAAAACGGGCGT 6765 |||||| | ||| || | ||||| Sbjct 475 CTGGAAGACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 172 bits (190), Expect = 1e-38 Identities = 250/347 (72%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 5923 CTTGTGCGCTAAGGTTGTCAGTTTCTATATATGAGGAAGATTTGATGGAAATTGTTCCGG 5982 ||| ||||||||| ||||||||||| | | | ||||| |||||||| | || | Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 5983 CAGCTATGCCTTTTAAATGTTCTGGCC----CCATTTGGTCAGAAAACACAATTTGTCGG 6038 | | |||||||| | ||||| |||| ||||||||||| |||| | | | Sbjct 232 CGGTGATGCCTTTGAGGG----TGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG 286 Query 6039 TTGTCAAGCTTAGTAGCAAATGACCCATAGAGGGCGTTAGAAAGTAGTTTAGCAATGGAG 6098 | ||||||||| || ||||| ||||| ||||||||||| || || | || || |||||| Sbjct 287 T-GTCAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAG 345 Query 6099 CGCTGTGTTTGGTTCTTTTCCCGATCGGCTTTTTCCTTGGCCGCAATGTTTAATTGCACA 6158 ||| | |||||||| ||| | |||||||| ||||||||||| ||||||| ||||| Sbjct 346 CGCAGGGTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACG 404 Query 6159 TATTCACGGGCTAAACAGTTCCAGCCTGGAAACACGGTGGTGCGTTCGTCGGGAATTAGT 6218 ||||| || || | || ||| | || || ||||||||||| |||||||| | || Sbjct 405 TATTCGCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGG 463 Query 6219 CTGACGTTCCAGCCGCGGTTGTGAAGTGTAATTACGTCTATGCTTGT 6265 ||| ||| ||||||||||| || || | | ||| | ||| || Sbjct 464 TGCACGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGT 510 >seq256110 Length=496 Score = 143 bits (158), Expect = 6e-30 Identities = 255/367 (69%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 10578 CTGGACTTGGAAGAAGGGCAGGGCTTAGCGCGACTCGGAGCCCTAAGTCCGGAGCGCCAT 10637 ||||||||||| || || ||||| | ||||| || ||||| | ||| ||||| || Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 10638 CCACGCGTAGCGCTAAAACGCGACGCGGCGGAAGCTTACGTTCCGC-GCAGCAACATGTT 10696 ||| | || ||| || || || || || || ||||| |||| |||| ||| |||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAG-AACCTGTT 249 Query 10697 TCGAGATCGCAGCGGTGAAGAGGCTGAGGAAATGCGGGACTTGCGGTTTCGGGCAGGCAG 10756 ||| || ||| || || ||| | ||||| |||||||| ||| | ||||| | Sbjct 248 TCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 10757 GGAATTACGCCATGGATTAGATCGTCAGCGTGTGTTACGGGAGGAGGATTTTGAAGTTGA 10816 || | || ||||| | |||| |||| || | || |||||||| ||||| || Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 10817 CGAAAGAACTGGAGTTAGTCCGGCGCGTGCGCATGTAGCTGCTGCTAATTTAGTTAGCGC 10876 || |||| || ||||||| ||||| || || || || || || | | || | ||| Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGC 69 Query 10877 TTATGAGCAGACAGTAAAAGAGGAAATGAACTTTCAGAAAAGCTTTAATCATCACGTGCG 10936 || |||||||| || || |||| || ||| |||| ||||||||||| | |||||||| Sbjct 68 ATACGAGCAGACGGTGAACCAGGAGATTAAC-TTCA-AAAAGCTTTAACAACCACGTGCG 11 Query 10937 AACACTT 10943 || ||| Sbjct 10 TACGCTT 4 >seq295602 Length=499 Score = 86.0 bits (94), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 14477 GTATCGTAGTTGGTACCTGGCTTACAACTACGGAGACCCAGAAAAGGGCGTGCGCTCCTG 14536 ||| || || |||||||| || ||||||||||| ||||| | | || | ||||| || Sbjct 370 GTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATG 429 Query 14537 GACTTTGCTAACTACTCCTGATGTAACGTGTGGATCCGAACAGGTGTACTGGTCAATGCC 14596 ||| |||| |||||||| ||||| || || || || ||||| |||||||| |||| Sbjct 430 GACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCC 489 Query 14597 AGACATG 14603 || |||| Sbjct 490 AG-CATG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109088276368336