Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_020487.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq272266 334 2e-87 seq213072 298 1e-76 seq256110 279 1e-70 seq295602 125 2e-24 >seq272266 Length=497 Score = 334 bits (370), Expect = 2e-87 Identities = 376/494 (76%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 6998 ACCTCGCCGCGCAGGCTCTCGTTGGTCCAGCAGAGACGGCCGCCCTTGCGCGAGCAGAAG 7057 ||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 7058 GGGGGCAGGACGTCGAGCATGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGAAGATGCCG 7117 || || ||| ||| ||| |||| ||||||||| ||||| | ||| |||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 7118 GGCAGCAGGTCGGGGTCAAAGTAGTCCAGGGGCGTG--TCGCGGC-GGTCGAGCCGTTGC 7174 ||||||||| | ||| |||||||| | | || || || ||| ||| ||| Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTA---TCTTGCATCCTTGCAAGTCTAGCGCCTGC 180 Query 7175 TGCCAGGCGTGCAGGGCCAGGGCCCGCTCGTAGGGGTTGAGGGGCGCCCCCGCGGGGAAG 7234 ||||| ||| | ||| || || |||||||| |||||||| || | ||| || | | Sbjct 181 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATG 240 Query 7235 GGATGGGTGAGGGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCG 7294 || |||||||| |||||||||||||||||||| |||||||| |||| ||||||||| | Sbjct 241 GGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTG 299 Query 7295 AGGACGCCGATGAAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGGACGTAGTCA 7354 || | || | | || |||||||| | || ||||||||||||||||| ||||| || Sbjct 300 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCG 359 Query 7355 TACAACTCGTGGGAGGGGGCGAGGAGGACGGAGCCGAGGTGGGGTTTCTGG-GGGC-GCT 7412 || | ||||| ||||| ||||||||| ||| ||||||| | | | || |||| ||| Sbjct 360 TATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGT--TGCTACGGGCGGGCTGCT 417 Query 7413 CGGCTCGGTAGACCACCTGGCGGAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGCCGTT 7472 | |||||| || | | ||| | ||||||||| || |||||||| || ||||| || || | Sbjct 418 CTGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCT 476 Query 7473 GGAAGATGTTGAAG 7486 |||||| ||||||| Sbjct 477 GGAAGACGTTGAAG 490 >seq213072 Length=511 Score = 298 bits (330), Expect = 1e-76 Identities = 271/336 (81%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 6659 CTGAGGTTGTCAGTTTCAATGAAGGAGGAGGATTTGATGGAATAGTGCCCCGAGGCCACG 6718 || || ||||||||||| | || |||||||||||||| || |||| || | | Sbjct 180 CTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCGGTGATG 239 Query 6719 CCCTTGACGAGGGCCCCCTCCATCTGGTCAGAAAACACCGTCTTTTTATTGTCCAGCTTG 6778 || |||| | |||| | ||||||||||||||||| | ||||||| | ||| |||||| Sbjct 240 CCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCAAGCTTG 297 Query 6779 GTGGCGAAGGAGCCATAGAGGGCGTTGGAGAGCAATTTGGCGATGGAGCGGAGCGTTTGG 6838 ||||| || || || |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct 298 GTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGG 357 Query 6839 TTTTTGTCGCGATCGGCGCGTTCCTTGGCGGCGATGTTGAGTTGCACGTACTCGCGGGCG 6898 |||||| ||||||||||||| |||||||| |||||||| || |||||||| ||||| || Sbjct 358 TTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCA 416 Query 6899 ACACAGCGCCACTCGGGGAAGACGGTGGCCCGCTCGTCGGGTTGCAAGCGCACGCGCCAG 6958 || || ||||| || ||||||||||||| ||||||||||| || | |||||||||| Sbjct 417 ACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACGCGCCAA 475 Query 6959 CCGCGGTTGTGCAGGGTCATGACGTCGATGCTGGTG 6994 ||||||||||||||||| | | ||| | ||||||| Sbjct 476 CCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 279 bits (308), Expect = 1e-70 Identities = 278/357 (78%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 11312 TTGGACGAGGGCGAGGGTCTGGCGCGTCTGGGGGCGCACGACCCCGAGCGGCACCCCCGC 11371 ||||| ||||||||||| |||||||| || || |||| | || ||||||||||| | Sbjct 361 TTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCAAGG 302 Query 11372 GTGCAGCTGAAGCGGGACACGCGCGAGGCGTACGTGCCGCGACGCAACGCGTTCAGGGAG 11431 |||||||||||||| || ||||| ||||||||||||||||| | ||| ||| | || Sbjct 301 GTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGAC 242 Query 11432 CGTGAGGGCCAGGAACCCGAGGAGATGAGGGATTTGAGGTTTCGGGCCGGTCGGGAGTT- 11490 || ||||| |||| |||||||||||| ||||| | ||| | || || || ||| | Sbjct 241 CGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTG 182 Query 11491 --GCATGATCTGGATCGCGAGCGGGTGCTGCGATCGGAGGATTTCGAGGTGGACCCGCGG 11548 ||||| ||| ||||||||||| ||||||| |||||| || ||| ||| |||| Sbjct 181 CGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGA 122 Query 11549 ACGGGCGTGAGTCCCGCGCGGGCGCACGTGGAGGCGGCCAACCTGGTGAGCGCGTACGAG 11608 || || | ||||||||||| || ||||||| ||| ||| ||||||| | ||| |||||| Sbjct 121 ACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAG 62 Query 11609 GAGACGGTGAAGCAGGAGATGAACTTTCAGAAGAGTTTCAACAACCACGTGCGCACG 11665 |||||||||| |||||||| ||| |||| || || || |||||||||||||| ||| Sbjct 61 CAGACGGTGAACCAGGAGATTAAC-TTCA-AAAAGCTTTAACAACCACGTGCGTACG 7 >seq295602 Length=499 Score = 125 bits (138), Expect = 2e-24 Identities = 106/129 (82%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 15486 TACCGCAGCTGGTACCTGGCCTACAACTACGGGGACCCGGAGAAGGGCGTGCGCTCGTGG 15545 ||||||||||||||||| || ||||||||||| ||||| ||| || | ||||| ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 15546 ACGCTGCTGACGACGCCCGACGTCACGTGCGGCTCGGAGCAGGTCTACTGGTCGCTGCCC 15605 || ||||| || || ||||| || ||||||||||||||||||||||||||| |||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 15606 GACATGATG 15614 | ||||||| Sbjct 491 G-CATGATG 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117162286083200