Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq213072 304 3e-78 seq256110 232 1e-56 seq272266 183 7e-42 seq295602 111 3e-20 >seq213072 Length=511 Score = 304 bits (336), Expect = 3e-78 Identities = 275/341 (81%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 5606 TCGGCGCTCAAGGTGTCAGTTTCTACAAACGAGGTGGATTTGATATTCACGCGGCCGGAG 5665 || ||||| | |||||||||| | |||||||| ||||||||||||||| |||| | | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5666 GCAATGTCCTTGACGGTGGAGGTTTCCATTTGGTCAGAAAAGACAATCTTTTTATTGTCA 5725 | ||| | |||| ||||| | ||||| |||||||||||| |||||||||| | |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 5726 AGTTTGGTGGCAAACGACCCGTAGAGGGCGTTAGATAGCAATTTGGCAATGGAACGTAAA 5785 || ||||||||||||||||||||||||||||| || ||||| ||||| ||||| || | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 5786 GTTTGAtttttttCACGGTCGGCCCGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCC 5845 ||||| ||||| | || ||||| |||||||||||||||||||| || || ||||| || Sbjct 352 GTTTG-GTTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 5846 CGGGCCACGCAGCGCCACTCCGGGAAAACAGTAGTGCGCTCGTCGGGCACTATACGGACG 5905 || || ||||| ||||| | |||||| || || ||||||||||||||||| | | ||| Sbjct 411 CGCGCAACGCACCGCCA-TTCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 5906 CTCCAGCCCCTGTTGTGCAGGGTAATAAGGTCCACACTGGT 5946 | ||| || | |||||||||||| | |||||| || ||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGT 510 >seq256110 Length=496 Score = 232 bits (256), Expect = 1e-56 Identities = 266/354 (75%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 10298 GACTTGGAGGAGGGGGAAGGCTTAGCTCGCTTGGGAGCGCCCTCTCCCGAACGCCATCCC 10357 |||||||||||||| || ||| | || || | |||||||||||||| || || || || Sbjct 364 GACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCA 305 Query 10358 CGGGTGCAGCTGGCCAGGGACGCCCGGCAGGCCTACGTTCCGCGGCAGAACCTCTTTAGA 10417 ||||||||||| | || | || |||| ||||| |||||||||||||| ||| | Sbjct 304 AGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGC 245 Query 10418 GACGGCAGCGGACAGGAGGCCGAGGAGATGCGCGACTGTCGGTTTCGGGCAGGGAAGGAG 10477 ||| || ||| ||||| ||||||||||||| || | ||| | |||||| ||| Sbjct 244 GACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAG 185 Query 10478 CTGCGAGCGGGGTTTG-ACCGAGAAAAGCTGTTGCGCGCCGAGGACTTTGAACCGGACGA 10536 ||||| || || || | || || | || |||||| ||||||||||| || |||| Sbjct 184 CTGCG-GCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGC 126 Query 10537 GGGTTCGGGCATCAGTCCGGCCCGCGCCCACGTGACGGCTGCCAATCTAGTTACCGCGTA 10596 | | | || || ||||| || ||||| |||||| |||| ||| | || || ||||| || Sbjct 125 GCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATA 66 Query 10597 CGAGCAGACGGTGAACGAGGAGCGAAACTTCCAAAAAAGCTTTAACAATCACGT 10650 |||||||||||||||| ||||| |||||| ||||||||||||||| ||||| Sbjct 65 CGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGT 14 >seq272266 Length=497 Score = 183 bits (202), Expect = 7e-42 Identities = 341/498 (68%), Gaps = 11/498 (2%) Strand=Plus/Plus Query 5950 TACCTCACCCCTGAGCGGTTCGTTGGTCCAGCACAACCTACCGCCTTTTCGGGAGCAAAA 6009 |||||| || | || | |||||||||||||| | | ||||| || || ||||| || Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6010 CGGGGGAAGTACGTCTAGCAAGTTGGAAGCCGGTGGGTCGGCGTCGATGGTGAAGATGCC 6069 || || || ||||||| | |||| ||||| ||||| | ||| |||| || Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6070 GGGGAGGAGAGACTTGTTAAAATAATTAATTTCTACGCGGTGTTGCAAG------GCCAA 6123 ||| || || | || || || | || | || ||||||| ||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTG 179 Query 6124 GTCCCACTTTTTGACGGCCAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAAGGCAT 6183 | ||| | |||| || || | |||||| || || || || |||||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6184 GGGGTGGGTAAGGGCGGAAGCGTACATGCCACAAATGTCATAAACATAAAGAGGCTGGCG 6243 ||||||||| || ||||| ||||||||||| |||||||| ||||| | || |||| | Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6244 TAAAACGCCAATGTATGTAGGATAGCAACGTCCGCCGCGAATGCTGGCCCTGACGTAATC 6303 | | |||| |||||||| ||||| | ||| ||||| |||||||| | |||||||| Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6304 GTACATTTCATGGGAGGGTGCCAAAAGGCCGCTCCCCAGGTGGGTTTTTTGGGGTTTTAC 6363 ||| | ||| || ||||| || | ||| || || |||| | | ||| | | Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6364 GGCGCGGTAGGCGATCTGTCGAAAGATGGCGTGGGAGTTGGAAGAGATGGTAGGCCTCTG 6423 || ||| | || ||||| | |||||||| || |||||||| || ||||| || | ||| Sbjct 419 TGCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6424 AAACACATTGAAGCTGGC 6441 || || ||||||||||| Sbjct 478 GAAGACGTTGAAGCTGGC 495 >seq295602 Length=499 Score = 111 bits (122), Expect = 3e-20 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 14068 ATCCAGCCTCTTACCAAAGACAGTAAAAATCGCAGTTACAACCTACTGCCCAA---CAAC 14124 ||| | || || || | ||||| || || ||||||||||||||| | ||| || | Sbjct 299 ATCAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGC 358 Query 14125 ACCGACACGGCGTACCGCAGCTGGTTTTTGGCTTACAACTACGGAGATCCCGAGAAGGGA 14184 ||| ||| |||||||||||||| | || ||||||||||| || || ||| ||| Sbjct 359 ACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGA 418 Query 14185 GTGCGCTCGTGGACGTTGCTGACGACTACGGACGTGACGTGCGGCTCGCAGCAAGTCTAT 14244 | ||||| ||||| |||| ||| | ||||| || ||||||||| |||| ||||| Sbjct 419 ATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTAC 478 Query 14245 TGGTCTCTGCCCGATATGATGC 14266 ||||| |||| | ||||||| Sbjct 479 TGGTCGTTGCCAG-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109371630810222