Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5389 233 2e-56 seq742 122 8e-23 >seq5389 Length=131951 Score = 233 bits (258), Expect = 2e-56 Identities = 966/1495 (65%), Gaps = 63/1495 (4%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| | |||| ||||| | ||||| | || |||||||| ||||| ||||| ||||||| Sbjct 38004 GTACAGGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGA 37945 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGT 138657 ||||| |||||| ||||| || || |||| | ||||| |||| || | Sbjct 37944 GGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCTT 37888 Query 138658 -TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||||||| | ||||||||| | ||| | || | | |||||| |||||||| Sbjct 37887 CTCCTTGAGCAGCTTCCAGTCCCAGAGGTCGGTGGGGGTCACGCCCCACATGTCGTACTG 37828 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | || ||| || |||| | ||| ||||| ||||| || | ||| ||| Sbjct 37827 CAGCACCCCCTTGCTGACGGGGCAGCCCGGGTACGTCTCGTACGGCCCCAGCTCCGCCGC 37768 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | |||| ||||| ||| ||||| | | ||| || || ||| || ||| ||||| Sbjct 37767 CTGCTCGCAGCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAG 37708 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 | ||||||| | ||||||| | || ||| | || |||| ||||||||||| || Sbjct 37707 GAGCTGGGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCC 37648 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG--ATA 138954 |||||||| | |||| ||| || || ||| || ||| || | || || || | Sbjct 37647 CTGCACGCCGATGCCGATAGGCCGGTGCCGCTTGTTCGAC-CTCTCGC-CCTCCGGCACC 37590 Query 138955 GGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTAT 139012 || || |||| || |||||||| ||||| | || ||||| |||||| || || Sbjct 37589 GGGTAGAAGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTG 37530 Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 || || | || ||| | |||| | || | |||| |||| ||| ||| Sbjct 37529 GCCAGCTTC--TTGAAGTCGAAGGTGCGCTCG--GCCGTC----ACGT--ACA----TGT 37484 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| || ||||| | ||||||||| || || ||||| | | |||| |||| | Sbjct 37483 TGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGA 37424 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 | || | |||| || || ||||||| || | || || || ||||| || |||| Sbjct 37423 TCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGT 37364 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | || || || ||||| ||||| || || ||||| || ||| || | ||| || ||| Sbjct 37363 TGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGG 37304 Query 139253 ATTTGAACAAGTCCCTAGCT-TGTATT--TGACGCACGTAAAGTT---CGTCGCGCTCGT 139306 | ||| ||| ||| || || |||| | | || || ||| ||||| Sbjct 37303 CGTGCCACA----CCT-GCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCCGC-CTCGT 37250 Query 139307 ACTTTTCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACT 139363 | ||| || | || || || | | || | | |||| || || | || | Sbjct 37249 AGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCAGT 37193 Query 139364 TGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCG 139423 || || ||||| || |||||| | ||| | || || | | |||||||||| || | Sbjct 37192 CGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGG 37133 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTT 139483 | ||||||| || | | || ||||| || || || ||| ||| |||| | Sbjct 37132 GGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCT 37073 Query 139484 TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 ||| | ||||| || || ||||| |||||||| || ||||| || ||||| | || | Sbjct 37072 TCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCC 37013 Query 139544 CTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | || ||||| || || || |||| || | | || ||| | ||||||| || Sbjct 37012 CGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCA 36953 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCT 139656 | ||| |||| ||| | | | |||||||||| |||| || || ||| Sbjct 36952 TGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCG---- 36897 Query 139657 CGGACGTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| | || | || | |||||| ||||| | | ||||| || | |||| | Sbjct 36896 CGGATG-CAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACT- 36839 Query 139716 GCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA-- 139772 || | | || ||||| || || ||||||||||||| ||| | | ||| ||||| Sbjct 36838 GCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGC 36779 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 || | || |||||| | || |||||||| ||||| || || ||||||||||| Sbjct 36778 TGCTG--AGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAA 36721 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 | | | ||||| || | |||||| || | |||| | || ||||| |||||| Sbjct 36720 CCACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGAT 36661 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 || || | || | ||||||||| || || ||| || |||||| ||| | ||| || Sbjct 36660 GCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTT 36601 Query 139953 tttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| || | ||| || |||||| |||| ||| | | ||| ||| ||| Sbjct 36600 CAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCG 36546 >seq742 Length=2242023 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24696 TTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||| || |||||||||||| | ||||| || || || || || || || || || || | Sbjct 1675052 TTGA-ACCATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGG 1675110 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 | ||| ||||| |||||| || ||| |||||||| ||||| ||||| || || | Sbjct 1675111 AGCCCAGTGACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCC 1675170 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 | ||||| || | ||||||| ||||| || |||||||| ||| | | | | |||| | Sbjct 1675171 CAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTG 1675230 Query 24876 ATTATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 | || ||||| || || ||||| || || || |||| Sbjct 1675231 ACTACAACATCCAGAAAGAATCCACCCTCCATCTTG 1675266 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 24696 TTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||| || ||||||||||| | || || || ||||| || || || || || || || | Sbjct 1678272 TTGA-ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGG 1678330 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 | | | |||||| | || | || || |||||||| ||||| ||||| || || | Sbjct 1678331 AGCCTAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCC 1678390 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 | ||||| || | ||||||| ||||| || |||||||| ||| | | | | |||| | Sbjct 1678391 CAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCG 1678450 Query 24876 ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| || || ||||| || || || | || |||| || | |||||| Sbjct 1678451 ACTACAACATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCTGAGGGGAGGC 1678506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447493870231560