Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_022266.1 Length=31967 Score E Sequences producing significant alignments: (Bits) Value seq213072 399 4e-107 seq272266 365 9e-97 seq256110 293 5e-75 seq295602 129 1e-25 >seq213072 Length=511 Score = 399 bits (442), Expect = 4e-107 Identities = 297/342 (87%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 6151 TCGGCGCTGAGGGTGTCAGTTTCCACGAACGAGGTGGATTTGATATTGACCTGTCCGGCG 6210 || ||||| || |||||||||||| ||||||| |||||||||||| ||||| || ||| Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6211 GCGATGCTTTTGACGGTGGCGGGGTCCATCTGGTCAGAAAAGACGATCTTTTTGTTGTCC 6270 | ||||| ||||| |||||| | |||||||||||||||||| | ||||||||| |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG-TGTCA 291 Query 6271 AGCTTGGTGGCGAACGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGGAGCGCAGG 6330 ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6331 GTCTGGTTCTTCTCGCGGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGGACGTACTCG 6390 || ||||| || |||| ||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6391 CGGGCCACGCAGCGCCATTCGGGGAAGACGGTGGCGCGCTCGTCCGGCAGGAGGCGCACG 6450 || || ||||| |||||||| ||||||||||||| ||||||||| |||| ||| ||||| Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6451 CGCCAGCCGCGGTTGTGCAGGGTGATGAGGTCCACGCTGGTG 6492 ||||| ||||||||||||||||||| ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq272266 Length=497 Score = 365 bits (404), Expect = 9e-97 Identities = 381/495 (77%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 6496 ACCTCGCCGCGCAGTGGCTCGTTGGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAGAAG 6555 ||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6556 GGGGGCAGGACGTCGAGCTGGTCCTCCGCgggggggTCGGCGTCGATGGTGAAGATGCCC 6615 || || ||| ||| ||||| ||| | |||||||| ||||| | ||| |||| || Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6616 GGTAGCAGGTGGCGGTCGAAGTAGTCGATGGCGACCGCGGGGTCGGCGAGGGCGCGTTCC 6675 || |||||| | |||||||||||| || | | | | | || || | | | Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGC 183 Query 6676 CAGTCCCTGACCGCCAGGGCGCGCTCGTAGGGGTTGAGGGGCGCCCCCCAGGGCATGGGA 6735 || | | | | || || ||||||||||| |||||||| || | ||||| |||||||| Sbjct 184 CATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGG 243 Query 6736 TGGGTGAGGGCCGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCGCGGAGC 6795 |||||||| || ||||||||||||||||| |||||||| |||| ||||||||| | ||| Sbjct 244 TGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAGT 302 Query 6796 ACGCCGAGGTAGGTGGGATAGCAGCGTCCGCCGCGGATGCTGGCGCGCACGTAGTCGTAC 6855 | || || || || || ||||| | ||| ||||||||||||||||||||||| ||||| Sbjct 303 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 362 Query 6856 ATCTCGTGCGAGGGGGCGAGGAGGCCGCCTCCGAGGTCGCCGCGCTGCGGTCTG-ACGGC 6914 | ||||||||||| ||||||||| || ||||||| || || |||| ||| | || Sbjct 363 AGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACG-GGCGGGCTGCTCTGC 421 Query 6915 CCGGTAGGTGACCTGGCGGAAGATGGCGTGCGAGTTGGAGGAGATGGTGGGCCGCTGGAA 6974 ||| || | | ||| | ||||||||| || |||||||| || ||||| || |||||||| Sbjct 422 TCGGAAGCT-ATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 480 Query 6975 GATGTTGAAGCTGGC 6989 || |||||||||||| Sbjct 481 GACGTTGAAGCTGGC 495 >seq256110 Length=496 Score = 293 bits (324), Expect = 5e-75 Identities = 286/366 (78%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 10913 CCTCGACTTGGAAGAAGGCGAGGGCCTGGCCCGGCTGGGAGCGCCCTCCCCCGAGCGCCA 10972 ||| |||||||| || |||||||||||||| ||||| ||||||||||| || ||||| || Sbjct 368 CCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCA 309 Query 10973 TCCCCGCGTGCAGCTGGCGAGAGACTCGCGCCAGGCCTACGTGCCGCCGCAGAATCTGTT 11032 || | ||||||||| | | || |||| |||| |||||||||| |||||| ||||| Sbjct 308 CCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTT 249 Query 11033 CAGGGACCGCAGCGGCCAGGAGCCCGAGGAGATGAGGGACCGCAGGTTTCACGCGGGGCG 11092 | |||||| || ||||||||||||||||| |||| || | ||| ||||| ||||| Sbjct 248 TCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 11093 GGAGCTGCGCGCGGGCTTCGACCGTCGGCGGGTGTTGCGCGCCGAAGACTTCGAGCCCGA 11152 |||||||| ||| | | || |||| || |||||| || ||||| |||||||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 11153 CGAGCGCAGCGGAGTAAGTCCGGCACGGGCGCACGTGTCGGCGGCCAACCTGGTGACCGC 11212 || ||| | ||| | ||||| || || || |||||| |||| ||| ||||||| ||||| Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGC 69 Query 11213 GTACGAGCAGACGGTGAACGAGGAGCGGAGCTTTCAGAAAAGCTTCAACAACCACGTGCG 11272 |||||||||||||||||| ||||| | | |||| |||||||| |||||||||||||| Sbjct 68 ATACGAGCAGACGGTGAACCAGGAGATTAAC-TTCA-AAAAGCTTTAACAACCACGTGCG 11 Query 11273 CACCCT 11278 || || Sbjct 10 TACGCT 5 >seq295602 Length=499 Score = 129 bits (142), Expect = 1e-25 Identities = 141/186 (76%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 14757 AGGATAGCAAGGACCGCAGTTACAACCTACTCCCCGGCGACCAGACCAACACGGCCTACC 14816 |||| |||||| | ||||||||||||||| | | ||| ||| ||| |||| Sbjct 315 AGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCACCTTCACCCAGTACC 374 Query 14817 GCAGCTGGTTCCTGGCCTACAACTACGGCGACCCCGAGAAGGGCGTCAGGTCCTGGACGC 14876 ||||||||| ||| || ||||||||||||||||| ||| || || | || ||||| | Sbjct 375 GCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGGACCC 434 Query 14877 TGCTGACCACCACGGACGTCACCTGCGGCTCGCAGCAGGTGTACTGGTCGCTCCCGGACA 14936 |||| ||| | ||||| |||||||||||| ||||||| ||||||||| | || | || Sbjct 435 TGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCAG-CA 493 Query 14937 TGATGC 14942 |||||| Sbjct 494 TGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101654201966046