Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5389 486 2e-132 seq742 147 2e-30 seq3564 105 6e-18 >seq5389 Length=131951 Score = 486 bits (538), Expect = 2e-132 Identities = 1034/1529 (68%), Gaps = 36/1529 (2%) Strand=Plus/Minus Query 148268 CTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGA 148327 ||| ||||| || | |||||| | || |||| |||||| || | || || | || Sbjct 38034 CTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGATGGA 37975 Query 148328 CTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGA 148387 |||||||||||||| ||||| || || | || ||||||||| ||| | |||||| Sbjct 37974 CTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCT 37915 Query 148388 GTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGC--CCAGTCCCAGAG--CG 148443 ||| | || ||| | || || || ||| |||| || |||||||||||| || Sbjct 37914 GTTCCTCACGCCGTGCTTGGCGATCTTCTCCTT--GAGCAGCTTCCAGTCCCAGAGGTCG 37857 Query 148444 GCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCT 148503 | | || |||||| |||||||||||||||||| | || ||| |||||| |||| Sbjct 37856 GTG--GGGGTCACGCCCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAGCCCG 37799 Query 148504 CGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGT 148563 ||||| |||||| || || |||||||| | |||||||||| ||| ||||| ||| Sbjct 37798 GGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGT 37739 Query 148564 AGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCA 148623 ||| || |||||| || ||||||||||| ||| ||| | ||| ||| | || Sbjct 37738 GGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGT 37679 Query 148624 TACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTT 148683 |||| | | | || |||||||| |||||||| ||||| | ||| || |||||||| Sbjct 37678 AGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCC 37619 Query 148684 TAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTCGATGATCTTGTCA 148742 |||| || | ||| ||| | | ||| ||| |||| ||||||||||||| Sbjct 37618 GCTTGTTCGA-CCTCTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTG 37560 Query 148743 AGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAATCGTACTTG 148796 || || ||| | |||||| || | ||| |||| || || || | || | Sbjct 37559 AGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTCG 37500 Query 148797 TCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCC 148856 | ||| | ||| ||| | ||||| ||||| || ||||||||||| ||| ||| Sbjct 37499 GCCGTCACG-TACAT--GTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCC 37443 Query 148857 GGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTC 148916 | | ||||||| | |||||| | |||||| |||||| | ||||| ||||| |||| Sbjct 37442 CCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTC 37383 Query 148917 TTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCC 148976 | || |||||||||| |||||| ||||||||||| |||||||| || ||| || ||| Sbjct 37382 TGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCC 37323 Query 148977 ACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA 149036 ||||| || | ||| | || | ||| || ||| ||| | Sbjct 37322 GTCTGCGACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTG 37263 Query 149037 CCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGA 149096 ||| || |||||| || |||||| ||| ||| |||| || |||| ||||| || Sbjct 37262 CCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 37203 Query 149097 CCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATA 149156 |||||||| | || |||||||| || ||||| | || | | ||| | |||||| Sbjct 37202 CCGGGGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATG 37143 Query 149157 AACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGC 149214 ||||| ||||| | ||| | |||| | ||||||| |||| ||| || || || Sbjct 37142 AACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGC--TCCTCCTTGC 37085 Query 149215 CCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACA 149274 || |||| ||| | || | ||| | ||| |||||||| ||||| | ||||| Sbjct 37084 CCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACA 37025 Query 149275 CCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAA 149331 |||| || || |||| |||||||||||||| |||| |||| || ||||||| Sbjct 37024 TGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGT 36965 Query 149332 ACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGC 149391 |||| || | ||| || | | ||| ||| ||||||| || | ||| || | Sbjct 36964 ACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCC 36905 Query 149392 C----GCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCG-CCGCCGTACTTTGAGAT 149446 | ||||| ||| | ||| |||||||||||| |||||| |||| ||||| Sbjct 36904 CCGTGGCGCGGATGCA----GCTCACCGCCACGCCGATGCCGCCCGCCG-ACTTGGAGAT 36850 Query 149447 GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAG 149506 | |||||| | |||||| |||||||||||||||||||||| |||||||| ||| Sbjct 36849 GAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAG 36790 Query 149507 CAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGC 149566 ||| ||||| || | ||||| |||||||| ||||| ||||| ||| Sbjct 36789 CAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGC 36730 Query 149567 GTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATC 149626 ||| || || | |||| || || | ||||| ||| | || ||| ||||| Sbjct 36729 GTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCT 36670 Query 149627 GCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTT 149686 |||||||| | || || | ||||||||| |||||||| ||||||||||| ||| Sbjct 36669 CTTGTGGATGCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCC 36610 Query 149687 TCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAA 149746 || || |||| ||| | || || |||||| |||| ||| | |||||| || Sbjct 36609 GTTGATCTTCAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAA 36550 Query 149747 GTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 ||||||| || | ||||||| || || Sbjct 36549 GTCGCGGTCGAAGATGATGGCGGAGTTGA 36521 >seq742 Length=2242023 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| |||||||| || ||||| ||| || ||| | || || ||||| Sbjct 1678482 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 1678423 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || ||||||||||||||||| |||||| Sbjct 1678422 CTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTT 1678363 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | |||||| | |||||||| || | ||||| ||| |||||||| Sbjct 1678362 GGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 1678303 Query 133637 CAGAGTTTTTACGAAAATCTGCATGG 133662 || || || ||||| |||||||||| Sbjct 1678302 GAGGGTCTTGACGAAGATCTGCATGG 1678277 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| |||||||| || ||||| || || ||| | || || ||||| Sbjct 1675262 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 1675203 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || || |||||||||||||| |||| | Sbjct 1675202 CTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATC-T 1675144 Query 133577 TTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | | | || | ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 1675143 TAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAG 1675084 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| ||||| || || |||||||||| Sbjct 1675083 TCAGGGTTTTGACAAAGATCTGCATGG 1675057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || |||||||| || ||||| || || ||| | || || ||||| Sbjct 1667593 ATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 1667534 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || ||||||||||||||||| |||||| Sbjct 1667533 CTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTT 1667474 >seq3564 Length=3914096 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||||||| | |||||| |||||||| ||||| ||||| ||||| || | Sbjct 3070153 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 3070094 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCC 148976 ||||||| |||||||| ||||||||||| || ||||| || ||| || ||| Sbjct 3070093 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTCC 3070041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480837961221480