Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1614 125 8e-24 >seq1614 Length=2256342 Score = 125 bits (138), Expect = 8e-24 Identities = 354/536 (66%), Gaps = 21/536 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| |||| || ||| |||| | |||||| ||||| || |||||| |||| | Sbjct 330960 GCCAGCTCTTTAGGTGAAGTGAAGTCATCCACGTGGATGAATGCATCTCCCTGGACAAAG 330901 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 ||||| || |||| |||| | || || || | || || | ||| | ||| | Sbjct 330900 TTTTCATAGTTCTGCCTCGCGGGGCCAAGAACCACTGGCACTGTGCCTACGGAAAGTGGG 330841 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||||||||| || || || |||||| | || | ||||||||||| | | ||||| Sbjct 330840 TTGTAGAGTTTCTCAGTGATGTAGTCCTTATGAATTGAGTTCTCAAATGACAAGTAGAAC 330781 Query 177126 TTACAG--GAAGATAGTAGCGGGAT-GAAGTCATCATCGGGTATATAATCTCCTACTACG 177182 || ||| | ||| || ||||| | |||| | |||| || || ||||| | | Sbjct 330780 TTGCAGCTGGCGATGGT---GGGATAGTAGTCTTGGTCGGCGATGTACTCTCCGAAGGCC 330724 Query 177183 TTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACG 177242 | ||||||| | || | || |||||||| | ||| |||||| | | |||| Sbjct 330723 TGCCCGTATGCGTGAACCTCGATGTGTTTGTACAACTCGTTGTAGTACTTAACCCGCACG 330664 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 ||||| |||||| ||||| |||| ||| || | | |||||| ||||| ||| Sbjct 330663 TGGTCCGGGTTCCAGTTGCTCACGATCCAACAGATCAGCTTGCT-TTTGC----TCGG-- 330611 Query 177303 TTCGATACTAATGCAGTGTCTC---TGAGCG---TTAGTGATCCATAGGGCACGTGAATA 177356 | || || || | |||| | || | |||||||| ||||| | ||| Sbjct 330610 -TGGA-ACAAAGTCCTCCTCTCCCTCCACCGCCACGATGGATCCATAAGGCACTTCAATG 330553 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAG 177416 || | ||| ||| ||| | | ||||| ||||| ||||| || || || | | | Sbjct 330552 TCAGCGTCCTGTCGGTAGTTGAGGGTGAGGTTGAACAGGTTCTCGATGCCCGGGATCTGG 330493 Query 177417 GGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 | | || | ||| ||||| | ||||||||||| |||||| || |||| ||| || Sbjct 330492 GAGGAGTGAGAGGGGGATTCCAGGTTCATCCATACCCACTTCTGGAAGGATGGCCT 330437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575341531819200