Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_025678.1 Length=32661 Score E Sequences producing significant alignments: (Bits) Value seq272266 188 1e-43 seq213072 183 6e-42 seq256110 132 1e-26 >seq272266 Length=497 Score = 188 bits (208), Expect = 1e-43 Identities = 282/399 (71%), Gaps = 10/399 (3%) Strand=Plus/Plus Query 6295 TACCTCTCCTCTTAGGCGTTCGTTGGTCCAACACAGTCTTCCACCTTTTTTGGAGCAAAA 6354 ||||||||| | |||||| ||||||||||| || || | || || || ||||| || Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6355 TGGGGGAAGCACGTCTAGGAGTGTTTCATCTGGGGGATCGGCATCAATTGTAAAGATCCC 6414 ||| || || |||||| | || || || ||||| || || || | ||||||| ||| Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6415 CGGTAAAAGTGAGGAGTCGAAATATGATATCTT------TTGAAAATTATTTAAAGTTTG 6468 || | || | |||||| || |||||| ||| || | || | || Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTC---TAGCGCCTG 179 Query 6469 TTGCCACTTGTGGGCCGCCAGCGCTCTTTCAAACGGATTAAgggggggTCCCCAAGGCAT 6528 ||||| | |||| || ||||| | || | || || || ||||| ||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6529 GGGGTGGGTAAGTGCAGAAGCGTACATTCCGCAAATGTCATACACGTAGAGAGGTTCGTT 6588 ||||||||| || || || |||||||| ||||||||||| || |||| ||| || || | Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6589 GAGGATGCCAATATAGGTGGGATAGCATCTTCCTCCGCGGATGCTGTTTCTTACATAGTC 6648 ||| || |||| ||| || || ||||||||||| |||||||||||| | || || || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6649 ATAAAGTTCATGGGAGGGGGCCAGAAAATTGGGACCAAG 6687 || ||||| || ||||| || || | | |||||| || Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAG 397 >seq213072 Length=511 Score = 183 bits (202), Expect = 6e-42 Identities = 250/344 (73%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 5949 CTTCCGCACTGAGATTGTCAGTTTCTATAAATGAGGAGGATTTGATATTAATTTGCCCGT 6008 |||| || || |||||||||||||| | ||| ||||||||||||||||| | || || Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 6009 TAGCTATTCCTCTAAGGGTTTTGTCGTCCAATTGGTCAGAAAATACAACTTTTTTAGTGT 6068 | || ||| | ||||| | |||| ||||||||||| ||| | |||| |||| Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAA-GCAA-TCTTTTTGTGT 289 Query 6069 CAAGTTTCGTGGCGAAAGACCCGTATAAAGCGTTCGACAGCAGTTTTGCAATAGACCTCA 6128 |||| || ||||| || |||||||| | ||||| ||||||| || || || || | || Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 6129 AAGTTTGGtttttttCCTTGTCTGCCTTTTCCTTGGCGGCTATGTTGAGCTGTACGTAAT 6188 |||||| ||||| | || || |||||||| || ||||| ||||| ||||| | Sbjct 350 GGGTTTGG-TTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 6189 CCCTCGCCACGCATTTCCACTCCGGAAAAACGGTAGTGCGTTCGTCGGGAATGAGACGCA 6248 | | ||| ||||| ||| | ||| || ||||| ||||| |||||||| | || ||| Sbjct 409 CGCGCGCAACGCACCGCCA-TTCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 6249 CCTTCCATCCTCTGTTGTGTAAGGTGACTATATCAATGCTGGTG 6292 | ||| || | |||||| | |||||| | |||| ||||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 132 bits (146), Expect = 1e-26 Identities = 243/355 (68%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 10571 TGGACGTAGAAGAGGGCGAGGGACTTGCAAGACTGGGAGCTCATTCGCCTGAAAGGCATC 10630 ||||| | || ||||||||||| || || | || ||||| | || ||||| |||| | Sbjct 366 TGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACC 307 Query 10631 CGCGGGTGCAGCTAAAAAAGGATTCAAGTGAAGCTTACGTTCCTTCCCGTAATACGTTTA 10690 | |||||||||| || ||| | |||| || ||||| || | || |||| Sbjct 306 CAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTC 247 Query 10691 GGGAGAGAAGCGGGGAGGAGCCTGAGGAAATGCGGGATTGTCGCTTTCGAGCGGGAAGGG 10750 | || | || |||||||| ||||| ||||||||| | || | || || | | Sbjct 246 GCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCG 187 Query 10751 AGTTAAGAAAGGGTATGGATCGTGACCGTTTACTGCGAGCTGAAGATTTCGAACCCCAGG 10810 || | | | || || |||| || || || ||||| | || || || || ||| | | Sbjct 186 AGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACG 127 Query 10811 AACGGACCGGGGTGAGCGCAGCCCGTGCGCACGTGGCCGCGGCCGACCTAGTTACTGCGT 10870 || |||||| | || | || || || |||||||| || |||||||| || || || | Sbjct 126 CGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCAT 67 Query 10871 ACGAGCAAACTGTGAAAGAGGAAATGAACTTTCAAAAAAGTTTTAACAATCATGT 10925 ||||||| || ||||| |||| || ||||| |||||| |||||||| || || Sbjct 66 ACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTTAACAACCACGT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103863729861202