Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5389 307 1e-78 seq742 95.1 1e-14 seq3564 89.7 5e-13 >seq5389 Length=131951 Score = 307 bits (340), Expect = 1e-78 Identities = 971/1471 (66%), Gaps = 58/1471 (4%) Strand=Plus/Minus Query 146902 TGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGAC 146961 || ||||| |||| ||||| | | | |||| ||||| ||| | ||||| | ||| Sbjct 38033 TGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGATGGAC 37974 Query 146962 TCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAA 147021 || || ||||| | || || ||||||| ||||| |||||| ||||| || || Sbjct 37973 TCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 37914 Query 147022 TTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCACA--TCGAC 147078 || | || |||| | ||| || ||||| | || || ||||||||| | ||| Sbjct 37913 TTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTT-CCAGTCCCAGAGGTCG-- 37857 Query 147079 GAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCG 147138 | ||| |||||| ||||||||||||||| ||||| || ||| |||| | ||| | | Sbjct 37856 GTGGGGGTCACGCCCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAGCCCGGG 37797 Query 147139 AACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAGCTTGCCTCGAGCGCTCCATA 147197 |||| ||| | || || | || ||| || ||||| | ||| ||||| | | Sbjct 37796 TACGTCTCGTA-CGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGTG 37738 Query 147198 GTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCAT 147257 ||| ||||| ||| ||| || |||| |||| || || ||||||| |||| | Sbjct 37737 GTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCG-AAGGGGT 37679 Query 147258 A-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCT 147316 | |||| || | ||||| ||||||| ||||| | |||| ||||||||| || ||| Sbjct 37678 AGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCC 37619 Query 147317 TTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGTTG 147375 | ||| | || ||| ||| | | || ||| |||| || || ||||||||| Sbjct 37618 GCTTGTTCGACCTCT-CGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTG 37560 Query 147376 AGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT 147435 ||||| ||| | || || || | | || |||| ||| || | || | || Sbjct 37559 AGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTCG 37500 Query 147436 TC-GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC 147494 | | ||||||| || ||| | ||||| || ||||| ||||| ||||| ||| || Sbjct 37499 GCCGTCACGTAC--AT--GTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTC 37444 Query 147495 GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATT 147554 || | |||||| | ||| || | ||||||||||||| | || ||| |||| || Sbjct 37443 CCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTT 37384 Query 147555 TTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 ||||| ||||| || || ||||| ||||| ||| |||||||||| || ||| ||||| Sbjct 37383 CTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTC 37324 Query 147615 GACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGCTCGCACCCGC-TG 147665 |||| || | ||| | ||| ||| | ||| | | ||| ||| || Sbjct 37323 CGTCTGCGACTCGATGATGGCGTGCCACACC--TGCTGTGCCTTCAC---CACGCGCTTG 37269 Query 147666 CCGATAGCGGCCCTCGTTTTCGTA-CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGC 147724 | | |||| | ||||| ||| | ||||| | ||||||||| || || ||| Sbjct 37268 GCCTT----GCCCGCCGCCTCGTAGCCGGT-GTACAGCTTCTCAAACTCCTCCCCCCAGC 37214 Query 147725 AATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAA 147784 | ||| | || ||||| || | | || |||||||| ||||| | || | | | Sbjct 37213 ACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCA 37154 Query 147785 CGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCA 147842 | | ||| ||||| || || | ||||| |||| | || |||| |||| ||| Sbjct 37153 CCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGC- 37095 Query 147843 ATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGG 147901 ||||| |||| |||| |||| | | | || | | ||| |||||||||||||| Sbjct 37094 -TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAACTCGA-AGACGTCGGCGTGCCAGG 37037 Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCA 147958 | || | ||| | ||| | || || ||| || ||||||||||| || | |||| Sbjct 37036 GCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCG 36977 Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018 || ||||||| ||||||||| |||||| |||||||| | | ||||||||||| Sbjct 36976 CCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGG 36917 Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG-CCGCCGTAC 148077 ||| | ||| || ||| || | | ||| ||||| |||||| |||||| || Sbjct 36916 CGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCG-AC 36858 Query 148078 TTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134 || || ||| ||||| | || | |||| ||||||||| ||||||||||||| Sbjct 36857 TTGGAGATGAGCGCGCACT-GCTTGAGCGTGTC--GTAGATGCCCTCGATGCTGTCGTCC 36801 Query 148135 TTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCGAGAAAA 148192 || | | | |||| || || | | ||||| || | || || || ||| | Sbjct 36800 TTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGG--TCGGTTGGTGCCGGCGTTGAACA 36743 Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252 | ||||| |||||||| ||| | || | || || | |||||||| | ||| Sbjct 36742 GCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGG 36683 Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312 | |||||||| ||| ||||||| ||| || | ||| ||||||||||| || || | Sbjct 36682 CGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCT 36623 Query 148313 CGGCAACTTGATTGTTGATCTTGAGAAGATA 148343 | || || | ||||||||| || || || Sbjct 36622 CCGCCACCTTGCCGTTGATCTTCAGCAGGTA 36592 >seq742 Length=2242023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||||||||| || ||| ||| |||||| ||||| || |||| Sbjct 1675252 GATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCG 1675193 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| |||||||| || |||||||| || || || || ||| | Sbjct 1675192 AAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTAACA 1675133 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | |||||||| || | || | || || |||||||| ||||| Sbjct 1675132 TTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTG 1675073 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 1675072 ACAAAGATCTGCATG 1675058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| || |||||||||||| || ||| ||| | Sbjct 1678493 CGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 1678434 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| || | ||| |||||||| || |||||||| || Sbjct 1678433 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTG 1678374 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | |||||||| || | || | Sbjct 1678373 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATG 1678314 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || || || | ||| ||||||||| Sbjct 1678313 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 1678278 >seq3564 Length=3914096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| || | ||||||||||||||| || ||| |||| || ||||| | Sbjct 3070153 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 3070094 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| |||| ||||| ||||| ||| |||| ||||| || ||| ||||| Sbjct 3070093 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTC 3070042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474064743807720